Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ...    34   0.067
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ...    34   0.067
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    30   0.82 
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ...    28   3.3  
At3g52680.1 68416.m05803 F-box family protein contains F-box dom...    28   4.4  
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr...    28   4.4  
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea...    27   7.7  
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea...    27   7.7  

>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative strong similarity to
           Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
           sativus] GI:1542941; contains InterPro accession
           IPR002155: Thiolase
          Length = 403

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 476 GLRYGHFHLIGYFLLDGIGDVFLDCIRNXAPSLPPQQF*CARGVHDD 336
           G R+GH  L+   L DG+ DV+ DC       L  ++F   R   DD
Sbjct: 140 GSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQDD 186


>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative strong similarity to
           Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
           sativus] GI:1542941; contains InterPro accession
           IPR002155: Thiolase
          Length = 398

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 476 GLRYGHFHLIGYFLLDGIGDVFLDCIRNXAPSLPPQQF*CARGVHDD 336
           G R+GH  L+   L DG+ DV+ DC       L  ++F   R   DD
Sbjct: 135 GSRFGHDSLVDGMLKDGLWDVYNDCGMGSCAELCAEKFQITREQQDD 181


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 80  PSVCLSPPWQRQPRPTMPPK*PCT 9
           PS C SPP + QP+P  PP  P T
Sbjct: 48  PSPCPSPPPKPQPKPVPPPACPPT 71


>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 513

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 125 LCHRCPFCLVSSLRLPSVCLSPP 57
           LC RC   L SS  +PSV + PP
Sbjct: 331 LCVRCALYLCSSSNVPSVTVGPP 353


>At3g52680.1 68416.m05803 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 124 YVIDAPFVLFLLFDCLRC 71
           YVI+APF+ +LL + LRC
Sbjct: 238 YVINAPFLKYLLIEELRC 255


>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 435

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 194 ALHSFRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRL 81
           A+H +       R     ++H+++ H C FC  SSL L
Sbjct: 397 AVHLWNRESKKLRIEEGSIIHQLMSHSCIFCNSSSLHL 434


>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400) (1
           weak); similar to ARP2/3 complex 41 kDa subunit
           (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
           (SP:O88656) [Rattus norvegicus]
          Length = 378

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 87  STAFGVPFSSLAKATTANDATK 22
           S AFG  + S +K+TTANDA++
Sbjct: 305 SEAFGKFYGSQSKSTTANDASE 326


>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400) (1
           weak); similar to ARP2/3 complex 41 kDa subunit
           (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
           (SP:O88656) [Rattus norvegicus]
          Length = 378

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 87  STAFGVPFSSLAKATTANDATK 22
           S AFG  + S +K+TTANDA++
Sbjct: 305 SEAFGKFYGSQSKSTTANDASE 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,277,683
Number of Sequences: 28952
Number of extensions: 152456
Number of successful extensions: 483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)