Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 116 2e-27
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 116 2e-27
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 116 2e-27
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 48 6e-07
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.060
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 3.9
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 5.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 6.8
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 6.8
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 25 9.0
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 116 bits (279), Expect = 2e-27
Identities = 52/72 (72%), Positives = 62/72 (86%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
CKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427
Query: 181 RQTVAVGVIKAV 216
RQTVAVGVIKAV
Sbjct: 428 RQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 116 bits (279), Expect = 2e-27
Identities = 52/72 (72%), Positives = 62/72 (86%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
CKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427
Query: 181 RQTVAVGVIKAV 216
RQTVAVGVIKAV
Sbjct: 428 RQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 116 bits (279), Expect = 2e-27
Identities = 52/72 (72%), Positives = 62/72 (86%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
CKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427
Query: 181 RQTVAVGVIKAV 216
RQTVAVGVIKAV
Sbjct: 428 RQTVAVGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 48.4 bits (110), Expect = 6e-07
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +1
Query: 7 FAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 186
FA++ K+D+ T + ++ P G I L P+C+E F+++ +GRF +RD
Sbjct: 592 FAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGT 650
Query: 187 TVAVG-VIKAVN 219
TVAVG V+K ++
Sbjct: 651 TVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.060
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 118 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 210
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 3.9
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -1
Query: 260 SAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTKLTMAA 87
S +VTLPPPAS ++ T T T + S ++ G+ + +++ + ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241
Query: 86 SPDLMDFGLTSVDLPVRRSTFSLIS 12
S L +TS PV S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 95 MAASPDLMDFGLTSVDLPVRRSTFS 21
++ +PDL D L+SVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 275 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTA 165
P + ++ T+PP S+ T + PT ++ + TA
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTA 109
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 248 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 126
+ L P +S + TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 276 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 380
+ +A A+N +I TT + K + E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 19 KEKVDRRTGKSTEVNPKSIKSGDAAIVNL 105
+EKV +RT S +N + ++ D ++NL
Sbjct: 39 EEKVTQRTASSDSLNTIASENNDENVINL 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,416
Number of Sequences: 5004
Number of extensions: 33363
Number of successful extensions: 100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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