Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 118 2e-27
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 118 2e-27
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 118 2e-27
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 27 8.1
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 118 bits (285), Expect = 2e-27
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 336 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 395
Query: 181 RQTVAVGVIKAV 216
RQTVAVGVIK+V
Sbjct: 396 RQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 118 bits (285), Expect = 2e-27
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429
Query: 181 RQTVAVGVIKAV 216
RQTVAVGVIK+V
Sbjct: 430 RQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 118 bits (285), Expect = 2e-27
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429
Query: 181 RQTVAVGVIKAV 216
RQTVAVGVIK+V
Sbjct: 430 RQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +1
Query: 28 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 204
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 205 IKAV 216
+K V
Sbjct: 528 LKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 517 CTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAG 576
Query: 181 RQTVAVGVIKAV 216
T+A G+++ V
Sbjct: 577 GNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 535 CTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAG 594
Query: 181 RQTVAVGVIKAV 216
T+A G+++ V
Sbjct: 595 GNTIAAGIVEKV 606
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 332 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 177
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 278 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 126
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 218 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRG 117
+ AL P T ++CL + K P GN+ D T RG
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRG 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,427,167
Number of Sequences: 27780
Number of extensions: 192980
Number of successful extensions: 530
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -