Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A10f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 105 1e-23
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 105 1e-23
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 105 1e-23
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 105 1e-23
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 97 8e-21
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 57 6e-09
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 46 1e-05
At4g27900.2 68417.m04005 expressed protein 32 0.27
At4g27900.1 68417.m04004 expressed protein 32 0.27
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 3.3
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 28 4.4
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 27 7.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 105 bits (253), Expect = 1e-23
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1
Query: 4 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 183
KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMR 418
Query: 184 QTVAVGVIKAVN 219
QTVAVGVIK+V+
Sbjct: 419 QTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 105 bits (253), Expect = 1e-23
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1
Query: 4 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 183
KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMR 418
Query: 184 QTVAVGVIKAVN 219
QTVAVGVIK+V+
Sbjct: 419 QTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 105 bits (253), Expect = 1e-23
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1
Query: 4 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 183
KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMR 418
Query: 184 QTVAVGVIKAVN 219
QTVAVGVIK+V+
Sbjct: 419 QTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 105 bits (253), Expect = 1e-23
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +1
Query: 4 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 183
KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAVRDMR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMR 418
Query: 184 QTVAVGVIKAVN 219
QTVAVGVIK+V+
Sbjct: 419 QTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 96.7 bits (230), Expect = 8e-21
Identities = 42/71 (59%), Positives = 56/71 (78%)
Frame = +1
Query: 4 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 183
KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMR
Sbjct: 25 KFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMR 84
Query: 184 QTVAVGVIKAV 216
QTV VGVIK+V
Sbjct: 85 QTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 57.2 bits (132), Expect = 6e-09
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +1
Query: 1 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 180
C+ E+K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R
Sbjct: 454 CEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTE 513
Query: 181 RQTVAVGVI 207
+T+AVG +
Sbjct: 514 GKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 46.4 bits (105), Expect = 1e-05
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +1
Query: 28 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 207
+D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR +R +TVA+G +
Sbjct: 601 LDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKV 660
Query: 208 KAV 216
+
Sbjct: 661 TRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.27
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 64 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 156
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.27
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 64 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 156
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 4 KFAEIKEKVDRRTGKSTEVNPKSI 75
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 371 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 195
+C L + + +K R C+ A N + F+ F A L+TLPPP+ P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511
Query: 194 ATVCLMS 174
A +M+
Sbjct: 512 APGAMMT 518
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 46 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 219
K+++ +P GD+ IV P KPL + S ++ PP+ + T + ++ VN
Sbjct: 447 KNSKKDPLPSAIGDSKIV--APEKPLALHSAKDSPPIQNNEAK-TEDTPVLSTVQPVN 501
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,765,706
Number of Sequences: 28952
Number of extensions: 176257
Number of successful extensions: 501
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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