Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    30   0.24 
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    30   0.24 
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    29   0.32 
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    28   0.73 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   0.73 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   0.97 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    26   3.0  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   3.0  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   3.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 403 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHVDINWHRGPGY 236
           FV ++   G   +  V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 403 FVPRIIRIGNDTSLVVYSSKCHRTSFVKTRYCHKYPRFFT*PMLHVDINWHRGPGY 236
           FV ++   G   +  V S+K HRT  ++  Y H  P++      H ++  H  P +
Sbjct: 57  FVGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAF 112


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 23/70 (32%), Positives = 28/70 (40%)
 Frame = -3

Query: 282 DLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQY 103
           D  C   S G E P   N F N+Y R  S  +  SS   C T   L F+  P  Q     
Sbjct: 85  DYLCKKVSKGPESPRV-NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFSV-PDVQPRLYT 142

Query: 102 DSRKNRSIPY 73
           +S  N  + Y
Sbjct: 143 NSSTNPDVLY 152


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 35  DPQLLNAFKLEMSYGIERFFLLSYCLACCWPGLGAKNNLRV-VRQWAELEFVFPN 196
           DP + N  +L   Y I    LLS   ACC    G + N+++ V  + E+  V+PN
Sbjct: 603 DPYIENEMRL---YRIR--VLLSLWTACCVTDEGKEKNIKIAVEIFREISIVYPN 652


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 187 HELQFRPLPHHAEIILRSETGPTARQT 107
           H  Q  PLP+H   +   ET PT  QT
Sbjct: 622 HNKQTNPLPYHIVYMFSFETSPTVFQT 648


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 315 GIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLF 142
           G  T  ++ L  + C  +SIG     T  + +N+Y     F  TN S +  +T  R F
Sbjct: 521 GSYTQTKEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHF 578


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 179  PVPPIASPRGD-YSSLRDRANSTPNNMTVEK 90
            P PP    + D Y +L D A  +PN MT++K
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKK 1129


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 246 PRCQLMSTCNIGQVKNRGYL*QYLVLT 326
           P C++  +CN  Q   +G+L +++V T
Sbjct: 292 PVCEIALSCNYDQTSFKGFLTRFMVYT 318


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 230 IVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANST 114
           + S++ +T  L+S T +P PP++SP    S      N +
Sbjct: 317 VSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNES 355


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 459  SSIATLNTEVSPPQFC 412
            SS+A +N EVSPP+ C
Sbjct: 1315 SSLARMNREVSPPKGC 1330


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 23/86 (26%), Positives = 34/86 (39%)
 Frame = -3

Query: 366 PSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGN 187
           PS+ T   +T   SS   I  N  +       + T I T    + +  S++Y  ASS   
Sbjct: 699 PSTFTTSFITS--SSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTST 756

Query: 186 TNSSSAHCLTTRRLFFAPRPGQQHAK 109
           T SS +   ++    F P      AK
Sbjct: 757 TTSSVSSRQSSSSSSFTPSSAISTAK 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,660
Number of Sequences: 5004
Number of extensions: 51231
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)