Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 33 0.18
08_02_0719 + 20388246-20390756,20391159-20391263 30 0.98
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 29 2.3
11_06_0099 + 20070925-20073867 29 3.0
08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440... 28 4.0
01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568 28 5.2
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 6.9
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 27 6.9
03_05_0964 - 29254947-29256183,29256275-29256381 27 6.9
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 6.9
10_01_0052 - 750902-751697,753077-753603,753696-753913,754012-75... 27 9.1
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438... 27 9.1
06_01_0518 + 3750996-3751424 27 9.1
04_04_0236 + 23825368-23825763,23826229-23828667 27 9.1
04_01_0614 + 8049199-8049579 27 9.1
01_01_0051 + 389051-389623 27 9.1
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 32.7 bits (71), Expect = 0.18
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 200 EARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPRFDEGRPVTFGTVDDEGRIVA 379
EA +YA +K+ + G +PI VD R+ + ++ T+ R + D G+
Sbjct: 444 EAAAYARKKKVILKGD-LPIGVD---RNSVDTWVYPTLFRMNTATGAPPDYFDKNGQNWG 499
Query: 380 YPDYSWHENQGQNCG 424
+P Y+W E N G
Sbjct: 500 FPTYNWEEMSKDNYG 514
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 362 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVARRHQLAPRTRVRKIVSL 219
RR+ Q+ +D RQN LS++ +F + +L T K++S+
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLSM 572
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 431 LVLRSFAPGFRAKNNPDRQ---RYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVARRH 261
+V R+ PG R N ++ ++ PR +Q + VL EV+ ++ A TY+
Sbjct: 402 VVERTVPPGVRLFNRSEQAANTQWTPR-VQKYIDNWVLATEEVIDEVRAHTEATYLRYLR 460
Query: 260 QLAPRTRVR 234
PRTR R
Sbjct: 461 WYLPRTRTR 469
>11_06_0099 + 20070925-20073867
Length = 980
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 17 HINLPEDPQLLNAFKLEMSY 76
H+N+ DPQ L FKLE SY
Sbjct: 450 HLNIVMDPQWLPPFKLEKSY 469
>08_01_0506 -
4400776-4400937,4401164-4401253,4401334-4401546,
4401725-4401817,4402357-4402551,4402643-4402735,
4403554-4403649,4404186-4404633,4405078-4405745,
4406822-4406884,4408650-4408847,4409265-4409982,
4410447-4410580
Length = 1056
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 386 DYSWHENQGQNCGGLTSVFRVAIDECNRLWXNGRRKDWRYTI 511
+YS+ + +NCG + F RLW + RR D Y++
Sbjct: 375 NYSFDSHVIENCGIKVAGFHADTMHLARLWDSSRRADGGYSL 416
>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
Length = 407
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -3
Query: 441 NTEVSPPQFCPWFSCQE*SG*ATIRPSSSTVPNVTGRPSSKRGIVTNIRDFLP 283
N + ++CP C E G T+ + T N+TG ++ + D LP
Sbjct: 314 NPVIVDQKYCPEKDCPEKKGSKTVTIKNVTFRNITGTSNTPEAVSLLCSDQLP 366
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 222 SNAYDRASSFGNTNSSSAHCLTT 154
+N A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 212 MTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKTARF 78
+T L + T TP PP ++P ++ R S + VE AR+
Sbjct: 29 VTACLATPTPTPPPPTSAPLAPAAAAARRELSAASRAVVEDEARY 73
>03_05_0964 - 29254947-29256183,29256275-29256381
Length = 447
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 161 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 265
R+W +FP+E+ +S+ + F GS+ +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +2
Query: 185 VFPNEEARSYALEKRFYVPGSSVPIDVDVQHR-SGKKSRIFVTIPRFDEGRPVTFGTVDD 361
V E R++ +EK P +P V HR S KK + GR TVD
Sbjct: 310 VIEKEPNRNFVVEKGRGTPLKDIP---SVAHRISRKKPADLKFLHNVLFGRKGK--TVDF 364
Query: 362 EGRIVAYPDYSWHEN 406
+G I+ + + WHE+
Sbjct: 365 KGHILQFSGFVWHES 379
>10_01_0052 -
750902-751697,753077-753603,753696-753913,754012-754114,
754337-754393
Length = 566
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 474 QRRLHSSIATLNTEVSPPQFCPWFSC 397
Q R A L+ E+SP Q+ PW C
Sbjct: 300 QFRFFDKAAILSDEISPAQWSPWRLC 325
>08_01_0505 -
4379722-4380795,4380868-4381008,4381099-4381270,
4381944-4382047,4382127-4382259,4384477-4384653,
4385164-4385309,4385536-4385625,4385703-4385915,
4386090-4386182,4386743-4386937,4387018-4387110,
4387924-4388019,4388556-4388985,4389424-4390091,
4392074-4392271,4392690-4393407,4394036-4394181
Length = 1628
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 386 DYSWHENQGQNCGGLTSVFRVAIDECNRLWXNGRRKDWRYTI 511
+YS+ + +NCG + F RLW + RR D Y++
Sbjct: 358 NYSFDIHVIENCGIKVAGFHADTMHLARLWDSSRRTDGGYSL 399
>06_01_0518 + 3750996-3751424
Length = 142
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 228 RFSNAYDRASSFGNTNSSSAHCLTTRRL 145
R SNAY+ +S N+ + HC R L
Sbjct: 17 RVSNAYNSGASSSNSTGDTKHCRIMREL 44
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 325 RRTSCDIWNCRRRGTYRCLSGLFLARKPGAKLRR 426
+RTS + + R T+ C G KPG K RR
Sbjct: 210 KRTSHSVDGVKYRATFVCYKGGIARIKPGLKARR 243
>04_01_0614 + 8049199-8049579
Length = 126
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 179 PVPPIASPRGDYSSLRDRANSTPNNMTVEKTARFRTT 69
P P+ S SSLRDR + NN TA TT
Sbjct: 43 PTAPLESTVISTSSLRDRESRDKNNAAATATAAASTT 79
>01_01_0051 + 389051-389623
Length = 190
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = -3
Query: 270 TSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDSRK 91
+S+S + + + S++ +SS +++SSS L RR P P Q+ K+
Sbjct: 101 SSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSP 160
Query: 90 NRSIPYDISSLKAFNS*GSS 31
+ S P S+ + +S GSS
Sbjct: 161 SPSPPSSSSTSSSSSSSGSS 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,119,923
Number of Sequences: 37544
Number of extensions: 338406
Number of successful extensions: 893
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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