Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15) 29 3.1
SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0) 28 4.1
SB_18830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2) 28 5.4
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 5.4
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 28 5.4
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 28 5.4
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 28 5.4
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07) 27 7.1
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)
Length = 1019
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 254 APRTRVRKIVSLMHMTELLRSETRTPVPPIASPRGDYSSL-RDRANSTP 111
A T+ + M ++ R+ET TP +SP S L +D +NSTP
Sbjct: 790 ANETKSSSVSQSMQNKKMYRTETNTPPVAHSSPNEGGSQLDQDTSNSTP 838
>SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)
Length = 575
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 197 RSETRTP-VPPIASPRGDYSSLRDRANSTPNNMTVEKTARFRTTFPV*KHSTAEDLLEDL 21
RS RT PP + YS L+D A T ++ T +K + F +HS A L+ L
Sbjct: 3 RSNQRTMFAPPKLTAASVYSKLKDIALFTGHSSTGKKVDIIKGMFVACRHSEARYLIRSL 62
>SB_18830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 78 ESSGFFYCHIVWRAVGPVSER-RIISAW*GNGRNWSSCFRTKK 203
E G+ Y +V V PV++R R I A WS C RTK+
Sbjct: 38 EFKGYEYKVLVNEDVPPVAQRQRAIPAMLKTKLKWSRCLRTKR 80
>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
Length = 1388
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 269 RRHQLAPRTRVRKIVSLMHMTELLRSETRTP 177
RRH+ +P+ + +S H E LRS T P
Sbjct: 1077 RRHRFSPQRQRSSTISATHRKEELRSSTAPP 1107
>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 356
Score = 27.9 bits (59), Expect = 5.4
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 369 RPSSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCT------STSIGTEDPGT*NRF-SNAY 211
RP+S + T RP+S+ T R F P T STS T P + + F + A
Sbjct: 70 RPNSQSTFTTTARPNSQSTFTTTARPFQPTFTTTARPKSQSTSTTTARPNSLSTFTTTAR 129
Query: 210 DRASSFGNTNSSSAHCLTT 154
S+F T TT
Sbjct: 130 PLQSTFTTTARPLQSTFTT 148
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 251 PRTRVRKIVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKTARFRT 72
PR + ++ T +R T +P +++PR Y S R +T V TA R
Sbjct: 792 PRHAYDSYSTRIYTTTRVRQVNTTAIPRVSTPRHAYDSYSTRIYTTTRVRHVNTTAIPRV 851
Query: 71 TFP 63
+ P
Sbjct: 852 STP 854
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSV 253
W LG+ N+ R+ R+W L F ++ R + FY P +V
Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAV 1203
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 329 LRQNEVLSQISAIFYLTYVARRHQLAPR---TRVRKIVSL 219
LR + S + FYLTY R H + PR TR+ + SL
Sbjct: 1234 LRTTPLTSDATTAFYLTYPRRDHCVLPRLPQTRLLRTTSL 1273
>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
Length = 1306
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 263 VDVQHRSGKKSRIFVTIPRFDEGRPVTFGTV---DDEGRIVAYPDYSWHENQ 409
V QH++ K+ + F G PV F V + R + P Y+WHE +
Sbjct: 221 VSSQHKAFLKNTV---CSLFVSGYPVLFSRVFPRSAQPRFIRLPSYTWHEKE 269
>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 327 SSKRGIVTNIRDFLPDLCCTSTSIGT 250
+++RGI NIR F+ ++C T+ ++ T
Sbjct: 27 TNERGIWQNIRRFVVEICVTTMNLAT 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,588
Number of Sequences: 59808
Number of extensions: 394049
Number of successful extensions: 1164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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