Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A09f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein. 32 1.4
BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain conta... 31 2.4
AY358546-1|AAQ88910.1| 592|Homo sapiens ROR-alpha protein. 31 2.4
AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein pr... 31 2.4
AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335... 31 2.4
AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain conta... 31 2.4
AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain conta... 31 2.4
AK026157-1|BAB15379.1| 829|Homo sapiens protein ( Homo sapiens ... 31 2.4
AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens ... 31 2.4
AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens ... 31 2.4
AF502591-1|AAQ07460.1| 982|Homo sapiens BRCC1 protein. 31 2.4
AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zip... 31 2.4
AF070542-1|AAC28634.1| 467|Homo sapiens unknown protein. 31 2.4
AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein. 31 2.4
BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein... 29 7.5
BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein... 29 7.5
AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related pr... 29 7.5
AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein... 29 7.5
>BC041331-1|AAH41331.2| 1121|Homo sapiens ZNF335 protein protein.
Length = 1121
Score = 31.9 bits (69), Expect = 1.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 269 RRHQLAPRTRVRKIVSLMHMTELLRSETRTPVPPIASP 156
RRH P +R R SL + EL + + P PP +SP
Sbjct: 489 RRHPEEPPSRRRPFFSLQQIEELKQQHSAAPGPPTSSP 526
>BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245
Query: 320 FDEGRPV 340
++ P+
Sbjct: 246 KNQNDPL 252
>AY358546-1|AAQ88910.1| 592|Homo sapiens ROR-alpha protein.
Length = 592
Score = 31.1 bits (67), Expect = 2.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 363 SSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSI 256
S+STVPN+T P++ + T + PD+ S S+
Sbjct: 421 STSTVPNMTDAPTAPKAGTTTVAPSAPDISANSRSL 456
>AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein
protein.
Length = 708
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245
Query: 320 FDEGRPV 340
++ P+
Sbjct: 246 KNQNDPL 252
>AL162458-3|CAC10457.1| 1342|Homo sapiens zinc finger protein 335
protein.
Length = 1342
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 269 RRHQLAPRTRVRKIVSLMHMTELLRSETRTPVPPIASP 156
RRH P +R R SL + EL + + P PP +SP
Sbjct: 710 RRHPEEPPSRRRPFFSLQQIEELKQQHSAAPGPPPSSP 747
>AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 798
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 217 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 276
Query: 320 FDEGRPV 340
++ P+
Sbjct: 277 KNQNDPL 283
>AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245
Query: 320 FDEGRPV 340
++ P+
Sbjct: 246 KNQNDPL 252
>AK026157-1|BAB15379.1| 829|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22504 fis, clone HRC11430. ).
Length = 829
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 269 RRHQLAPRTRVRKIVSLMHMTELLRSETRTPVPPIASP 156
RRH P +R R SL + EL + + P PP +SP
Sbjct: 197 RRHPEEPPSRRRPFFSLQQIEELKQQHSAAPGPPPSSP 234
>AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245
Query: 320 FDEGRPV 340
++ P+
Sbjct: 246 KNQNDPL 252
>AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245
Query: 320 FDEGRPV 340
++ P+
Sbjct: 246 KNQNDPL 252
>AF502591-1|AAQ07460.1| 982|Homo sapiens BRCC1 protein.
Length = 982
Score = 31.1 bits (67), Expect = 2.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 363 SSSTVPNVTGRPSSKRGIVTNIRDFLPDLCCTSTSI 256
S+STVPN+T P++ + T + PD+ S S+
Sbjct: 421 STSTVPNMTDAPTAPKAGTTTVAPSAPDISANSRSL 456
>AF395833-1|AAN09900.1| 1342|Homo sapiens zinc-finger/leucine-zipper
co-transducer NIF1 protein.
Length = 1342
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 269 RRHQLAPRTRVRKIVSLMHMTELLRSETRTPVPPIASP 156
RRH P +R R SL + EL + + P PP +SP
Sbjct: 710 RRHPEEPPSRRRPFFSLQQIEELKQQHSAAPGPPPSSP 747
>AF070542-1|AAC28634.1| 467|Homo sapiens unknown protein.
Length = 467
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 186 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 245
Query: 320 FDEGRPV 340
++ P+
Sbjct: 246 KNQNDPL 252
>AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein.
Length = 826
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/67 (17%), Positives = 32/67 (47%)
Frame = +2
Query: 140 KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDVDVQHRSGKKSRIFVTIPR 319
K +L ++ ++EF + + A + R G+ + D+ ++H G +++ +P
Sbjct: 245 KGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS 304
Query: 320 FDEGRPV 340
++ P+
Sbjct: 305 KNQNDPL 311
>BC126405-1|AAI26406.1| 1613|Homo sapiens low density lipoprotein
receptor-related protein 6 protein.
Length = 1613
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 254 APRTRVRKIVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKT 87
AP R+ + + T L ++ PVPP +PR Y S + S P + E++
Sbjct: 1542 APSRRMTSVATAKGYTSDLNYDSE-PVPPPPTPRSQYLSAEENYESCPPSPYTERS 1596
>BC117136-1|AAI17137.1| 1613|Homo sapiens low density lipoprotein
receptor-related protein 6 protein.
Length = 1613
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 254 APRTRVRKIVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKT 87
AP R+ + + T L ++ PVPP +PR Y S + S P + E++
Sbjct: 1542 APSRRMTSVATAKGYTSDLNYDSE-PVPPPPTPRSQYLSAEENYESCPPSPYTERS 1596
>AF074264-1|AAC33006.1| 1613|Homo sapiens LDL receptor-related protein
6 protein.
Length = 1613
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 254 APRTRVRKIVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKT 87
AP R+ + + T L ++ PVPP +PR Y S + S P + E++
Sbjct: 1542 APSRRMTSVATAKGYTSDLNYDSE-PVPPPPTPRSQYLSAEENYESCPPSPYTERS 1596
>AB209683-1|BAD92920.1| 1477|Homo sapiens low density lipoprotein
receptor-related protein 6 variant protein.
Length = 1477
Score = 29.5 bits (63), Expect = 7.5
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 254 APRTRVRKIVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKT 87
AP R+ + + T L ++ PVPP +PR Y S + S P + E++
Sbjct: 1406 APSRRMTSVATAKGYTSDLNYDSE-PVPPPPTPRSQYLSAEENYESCPPSPYTERS 1460
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,245,605
Number of Sequences: 237096
Number of extensions: 1787275
Number of successful extensions: 3823
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3823
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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