Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A09f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 29 1.4
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4... 29 1.4
At3g14880.1 68416.m01881 DNA-binding protein-related low similar... 28 3.3
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 28 3.3
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i... 28 3.3
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i... 28 3.3
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i... 28 3.3
At1g27580.1 68414.m03361 F-box family protein similar to F-box p... 28 3.3
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 28 4.4
At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase fa... 28 4.4
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d... 27 5.8
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 27 7.7
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 27 7.7
At2g38590.1 68415.m04740 F-box family protein contains Pfam prof... 27 7.7
At1g72250.1 68414.m08353 kinesin motor protein-related 27 7.7
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 27 7.7
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -3
Query: 372 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 259
+R SSS P+ +G PS+K +V NI P CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417
>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
HD-ZIP protein 4 identical to Homeobox-leucine zipper
protein ATHB-4 (HD-ZIP protein ATHB-4) (SP:P92953)
[Arabidopsis thaliana]
Length = 318
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -3
Query: 444 LNTEVSPPQ---FCPWFSCQE*SG*A---TIRPSSSTVPNVTGRPSSKR 316
L ++PP CP SC+ S A T PS++T P V GRPS +R
Sbjct: 257 LYMHMTPPTTLTMCP--SCERVSSSAATVTAAPSTTTTPTVVGRPSPQR 303
>At3g14880.1 68416.m01881 DNA-binding protein-related low similarity
to tumor-related protein [Nicotiana glauca x Nicotiana
langsdorffii] GI:688423, SP|O24160 TGACG-sequence
specific DNA-binding protein TGA-2.1 {Nicotiana tabacum}
Length = 237
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 251 PRTRVRKIVSLMHMTELLRSETRTPVPPIASP 156
P R+R++ ++H T+ LR T T V + SP
Sbjct: 174 PDQRIRRLAEIVHRTDDLRLRTITRVVEVLSP 205
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 252 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 130
T+ P + + + YD AS F T SSSA T +R F PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209
>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 302
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 422 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 270
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 422 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 270
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
identical to RNA polymerase subunit [Arabidopsis
thaliana] GI:514322; contains Pfam profile PF01000: RNA
polymerase Rpb3/RpoA insert domain
Length = 375
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 422 RSFAPGFRAKNNPDRQRYVPRRLQFQMSQDVLRQNEVLSQISAIFYLTYVA 270
+ FA F + PD +P L+ Q ++ V + N SAI+ TYV+
Sbjct: 7 KQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVS 57
>At1g27580.1 68414.m03361 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins;simlar to unknown protein
GB:AAC63676
Length = 364
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 194 SETRTPVPPIASPRGDYSSLRDRANSTPNNMTVEKTARFRTTFPV*KHSTAEDLLEDLYV 15
SE R +PP+ S +G + + +M ++ FR FP H+ AEDL L+V
Sbjct: 72 SEKRIDLPPLESFKGSHFKIWREGEENVKHMLMDDEDPFRDEFP---HA-AEDLRGRLWV 127
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 183 NSSSAHCLTTRRLFFAPRPGQQHAKQYDSRKN-RSIPYDIS 64
N+SSA L +R AP G+Q + +S+ N RS+ D S
Sbjct: 121 NNSSALVLHSRSRSLAPENGEQSSSSQNSKSNIRSVSSDTS 161
>At1g68710.1 68414.m07850 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from {Mus musculus} SP|P98200, {Bos
taurus} SP|Q29449, {Homo sapiens} SP|O43520; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1200
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = -2
Query: 325 VKTRYCHKYPRFFT*PMLHVDINWHRGPGYVKSFL*CI*PSFFVRKHELQFRPLPHHAEI 146
V RYC K+P + + +V +W R G++ + FF+ K LQ + H +
Sbjct: 984 VSARYCLKFPLLYQEGVQNVLFSWRRILGWMFNGFYSAVIIFFLCKSSLQSQAFNHDGKT 1043
Query: 145 ILRSETGPT 119
R G T
Sbjct: 1044 PGREILGGT 1052
>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 185
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 363 SSSTVPNVTGRPSSKRGIVTNIRDFLP 283
+++T P T +P K+GI+ I+D LP
Sbjct: 151 ATTTGPATTDQPHEKKGILEKIKDKLP 177
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = -3
Query: 282 DLCCTSTSIGTEDPGT*NRFSNAY---DRASSFGNTNSSSAHCL----TTRRLFFAPRPG 124
D+C TS + ++ T RFS Y D A N NS + + T RL P
Sbjct: 295 DICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPL 354
Query: 123 QQHAKQYDSRKNRSIPYDISSLKAFN 46
Q + + + N +P SS + F+
Sbjct: 355 QNNLHELWALLNFLLPEVFSSAETFD 380
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = -3
Query: 282 DLCCTSTSIGTEDPGT*NRFSNAY---DRASSFGNTNSSSAHCL----TTRRLFFAPRPG 124
D+C TS + ++ T RFS Y D A N NS + + T RL P
Sbjct: 295 DICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPL 354
Query: 123 QQHAKQYDSRKNRSIPYDISSLKAFN 46
Q + + + N +P SS + F+
Sbjct: 355 QNNLHELWALLNFLLPEVFSSAETFD 380
>At2g38590.1 68415.m04740 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 424
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 376 NDTSLVVYSSKCHRTSFVKTRYCHK 302
+DT +VV++ C +T +++ RY H+
Sbjct: 127 DDTRVVVWNPYCGQTRWIQLRYSHR 151
>At1g72250.1 68414.m08353 kinesin motor protein-related
Length = 1195
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 269 RRHQLAPRTRVRKIVSLMHMTELLRSETRTPVPPIASPRGDYSSLRDRANS 117
RR LAP T + + + L S T +PP+ + YS L ++ N+
Sbjct: 1001 RRSSLAPTTSTSREMVYLTRPPLSESTTSYDLPPLPNGGLKYSDLIEKVNN 1051
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 269 VQHRSGKKSRIFVTIPR-FDEGRPVTFGTVDDEGRI 373
V S +KS +T+P EGRP+ + D+EG +
Sbjct: 176 VSRTSSEKSEEELTVPPPKSEGRPIYYHIADEEGHV 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,175,658
Number of Sequences: 28952
Number of extensions: 269678
Number of successful extensions: 736
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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