Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0305 - 2181727-2184793,2185635-2185945                           27   6.9  
06_01_0754 - 5644310-5646292                                           27   9.1  

>07_01_0305 - 2181727-2184793,2185635-2185945
          Length = 1125

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 271  LHGFVCTKFSHEKNPTLKNVCTYIDFQYSISSVRTQRQIRSYE 143
            +HG   T  S  KNP L+ +        SIS +     +RS+E
Sbjct: 992  IHGEDITDISFSKNPKLEKIVWSFREMKSISGIERLPSLRSFE 1034


>06_01_0754 - 5644310-5646292
          Length = 660

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 265 GFVCTKFSHEKNPTLKNVCTYIDFQYSISSVRTQRQIRS 149
           G +C++   E  P+++ VC Y+D +  +    T   I S
Sbjct: 588 GLMCSQARPEARPSMRQVCRYLDGEEMLQEDATPAAIFS 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,809
Number of Sequences: 37544
Number of extensions: 175405
Number of successful extensions: 297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)