Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A08f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075425-1|AAL68241.1| 1234|Drosophila melanogaster LD46584p pro...    30   1.7  
AJ011114-1|CAA09492.1| 1234|Drosophila melanogaster coatomer alp...    30   1.7  
AE014296-317|AAF47535.1| 1234|Drosophila melanogaster CG7961-PB,...    30   1.7  
AE014296-316|AAF47534.1| 1234|Drosophila melanogaster CG7961-PA,...    30   1.7  
AE014298-2650|AAF48787.1|  531|Drosophila melanogaster CG12672-P...    28   6.7  
DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A pro...    28   8.8  
AY142217-1|AAN52145.1| 3803|Drosophila melanogaster transformati...    28   8.8  
AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,...    28   8.8  
AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,...    28   8.8  
AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,...    28   8.8  

>AY075425-1|AAL68241.1| 1234|Drosophila melanogaster LD46584p protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 313  RLFVTRFC*FIYMSLHGFVCTKFSHEKNPTLKNVCTYIDFQYSISSVRTQR 161
            +L V  F  F  + L  + C++ S+  NP L+++  Y    YS ++++ QR
Sbjct: 956  QLGVVNFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQR 1006


>AJ011114-1|CAA09492.1| 1234|Drosophila melanogaster coatomer alpha
            subunit protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 313  RLFVTRFC*FIYMSLHGFVCTKFSHEKNPTLKNVCTYIDFQYSISSVRTQR 161
            +L V  F  F  + L  + C++ S+  NP L+++  Y    YS ++++ QR
Sbjct: 956  QLGVVNFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQR 1006


>AE014296-317|AAF47535.1| 1234|Drosophila melanogaster CG7961-PB,
            isoform B protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 313  RLFVTRFC*FIYMSLHGFVCTKFSHEKNPTLKNVCTYIDFQYSISSVRTQR 161
            +L V  F  F  + L  + C++ S+  NP L+++  Y    YS ++++ QR
Sbjct: 956  QLGVVNFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQR 1006


>AE014296-316|AAF47534.1| 1234|Drosophila melanogaster CG7961-PA,
            isoform A protein.
          Length = 1234

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 313  RLFVTRFC*FIYMSLHGFVCTKFSHEKNPTLKNVCTYIDFQYSISSVRTQR 161
            +L V  F  F  + L  + C++ S+  NP L+++  Y    YS ++++ QR
Sbjct: 956  QLGVVNFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPLRNYSETNIKLQR 1006


>AE014298-2650|AAF48787.1|  531|Drosophila melanogaster CG12672-PA
           protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -2

Query: 388 KAPPLWC-QFVLYFRINK*IDCRIKPRLFVTRFC*FIYMSLHGFVCTKFS----HEKNPT 224
           K PPL    +     I K  + +I  ++     C F Y  ++   C  F     ++ N T
Sbjct: 463 KHPPLLSLTYTKQKMIKKKTNIKISMKIMRQNKC-FYYHLIYAICCNSFDFLACNDLNKT 521

Query: 223 LKNVCTYIDF 194
           +KN C YI F
Sbjct: 522 IKNTCKYIVF 531


>DQ352451-1|ABD22987.1| 3790|Drosophila melanogaster Nipped-A protein.
          Length = 3790

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 223  LKNVCTYIDFQYSISSVRTQRQ----IRSYERALSL*AQHRSV*IALLKTYYVKVLLRYF 56
            L N+CT IDF   ++++ +  Q    IR  +R LSL   H++  I  L   ++  ++  F
Sbjct: 2087 LNNICTGIDFLTFLTTILSPDQLVSIIRPVQRGLSLCIIHQNTRIVRLMHMFLTRIMAIF 2146


>AY142217-1|AAN52145.1| 3803|Drosophila melanogaster
            transformation/transcription domain-associated protein
            protein.
          Length = 3803

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 223  LKNVCTYIDFQYSISSVRTQRQ----IRSYERALSL*AQHRSV*IALLKTYYVKVLLRYF 56
            L N+CT IDF   ++++ +  Q    IR  +R LSL   H++  I  L   ++  ++  F
Sbjct: 2100 LNNICTGIDFLTFLTTILSPDQLVSIIRPVQRGLSLCIIHQNTRIVRLMHMFLTRIMAIF 2159


>AE013599-60|AAF57342.2| 3805|Drosophila melanogaster CG33554-PA,
            isoform A protein.
          Length = 3805

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 223  LKNVCTYIDFQYSISSVRTQRQ----IRSYERALSL*AQHRSV*IALLKTYYVKVLLRYF 56
            L N+CT IDF   ++++ +  Q    IR  +R LSL   H++  I  L   ++  ++  F
Sbjct: 2102 LNNICTGIDFLTFLTTILSPDQLVSIIRPVQRGLSLCIIHQNTRIVRLMHMFLTRIMAIF 2161


>AE013599-59|ABI31023.1| 3628|Drosophila melanogaster CG33554-PC,
            isoform C protein.
          Length = 3628

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 223  LKNVCTYIDFQYSISSVRTQRQ----IRSYERALSL*AQHRSV*IALLKTYYVKVLLRYF 56
            L N+CT IDF   ++++ +  Q    IR  +R LSL   H++  I  L   ++  ++  F
Sbjct: 1965 LNNICTGIDFLTFLTTILSPDQLVSIIRPVQRGLSLCIIHQNTRIVRLMHMFLTRIMAIF 2024


>AE013599-58|ABI31022.1| 3400|Drosophila melanogaster CG33554-PB,
            isoform B protein.
          Length = 3400

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 223  LKNVCTYIDFQYSISSVRTQRQ----IRSYERALSL*AQHRSV*IALLKTYYVKVLLRYF 56
            L N+CT IDF   ++++ +  Q    IR  +R LSL   H++  I  L   ++  ++  F
Sbjct: 1737 LNNICTGIDFLTFLTTILSPDQLVSIIRPVQRGLSLCIIHQNTRIVRLMHMFLTRIMAIF 1796


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,779
Number of Sequences: 53049
Number of extensions: 322624
Number of successful extensions: 567
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)