Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    50   2e-07
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    29   0.56 
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   3.9  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   3.9  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   5.2  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   6.8  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +1

Query: 418 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTN 519
           +SLLNPKAE  + AQAL VNISAA G+QDV+K+N
Sbjct: 2   LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSN 35


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +2

Query: 62  SIH*HYALYTRH*TLESQTLEAHRVTFSSLNKIIWIRPLETITSFHKSTHYT 217
           SI   Y +Y  +  L +  L++ +V + S   I++I P  T+TSFH+  +Y+
Sbjct: 112 SILLQYCMYAAYHCLGNNDLDSAKVWYFS---ILYI-PTTTLTSFHEEAYYS 159


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 263 FSIIYINIHCWLANYGCNVLICGRK 189
           FS I + +  W+ANY  N  + G K
Sbjct: 112 FSSILVCVPAWIANYVTNAEVIGEK 136


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 130  SRHIFFFK*DHLDPTFRNNNFLPQINTLHP*FASQQCI 243
            S  + F+K DHLDP     N    ++ +H  F  Q C+
Sbjct: 1077 SGKLIFYKSDHLDP-----NACSNVSPIHREFGLQSCL 1109


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 175 FRNNNFLPQINTLHP*FASQQCILMYIIEKQQHNKQS 285
           FRN NF+P +  L+P +   + +    I  Q +N ++
Sbjct: 6   FRNFNFMPLLRPLNPVYKGAEHLCRKNIHNQVYNVET 42


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 370 SS*LIETENVLNEMAAISL-----LNPKAEFARAAQALAVNI 480
           SS  IE E+V+   AA+SL     LNPK   A + Q   ++I
Sbjct: 447 SSSFIEEEHVIWYFAAVSLSLLQLLNPKTRLAGSLQLFCLSI 488


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 187 NFLPQINTLHP*FASQQCILMYIIEKQ 267
           NF P+I T+H   +  Q +L  IIEK+
Sbjct: 83  NFFPEIQTIHKKISQVQSLLK-IIEKK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,092
Number of Sequences: 5004
Number of extensions: 38733
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)