Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   1e-08
SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)                    29   3.1  
SB_26961| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)                 27   9.4  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/37 (70%), Positives = 33/37 (89%)
 Frame = +1

Query: 409 MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTN 519
           MAAI  LNPKAE AR+A AL++NI+AA+G+QDV+KTN
Sbjct: 1   MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTN 37


>SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)
          Length = 668

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = -1

Query: 323 KTVGLFFRVKIIRDCLLCCCFSIIYINIHCWLANYGCNVLICGRKLLF 180
           +TVG++ RV  IRD +  C F   ++ +H +L+ + C  L+ G  ++F
Sbjct: 221 ETVGVWTRV--IRDEMDRCGFQNGHLLVHAFLSCFRCTTLLPGVLIVF 266


>SB_26961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 326 LKTVGLFFRVKIIRDCLLCCCF 261
           L+  GL   V+ +R C+ CCCF
Sbjct: 148 LRQRGLAISVQRLRRCICCCCF 169


>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
          Length = 606

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 311 LFFRVKIIRDCLLCCCFSIIYINIHC 234
           LFF   +I  C  CCC      N  C
Sbjct: 500 LFFCCGVITGCYFCCCCCFFCFNFCC 525


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,697
Number of Sequences: 59808
Number of extensions: 290565
Number of successful extensions: 663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)