Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13070-3|AAM22058.1|  429|Caenorhabditis elegans Chaperonin cont...    51   6e-07
U13070-2|AAC46642.1|  539|Caenorhabditis elegans Chaperonin cont...    51   6e-07
U23526-1|AAK95866.1|  252|Caenorhabditis elegans Claudin-like in...    30   1.2  
AF252604-1|AAF67350.1|  252|Caenorhabditis elegans Gas3/PMP22-li...    30   1.2  
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    27   8.1  

>U13070-3|AAM22058.1|  429|Caenorhabditis elegans Chaperonin
           containing tcp-1 protein6, isoform b protein.
          Length = 429

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +1

Query: 409 MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTN 519
           M++I  LNPKAE AR A AL +NIS A+G+QDVM++N
Sbjct: 1   MSSIQCLNPKAELARHAAALELNISGARGLQDVMRSN 37


>U13070-2|AAC46642.1|  539|Caenorhabditis elegans Chaperonin
           containing tcp-1 protein6, isoform a protein.
          Length = 539

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +1

Query: 409 MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTN 519
           M++I  LNPKAE AR A AL +NIS A+G+QDVM++N
Sbjct: 1   MSSIQCLNPKAELARHAAALELNISGARGLQDVMRSN 37


>U23526-1|AAK95866.1|  252|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 2 protein.
          Length = 252

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -1

Query: 428 NKLMAAISFNTFSVSINHEETLVPNSAQGIFQVILKTV 315
           ++  A +S  +F VS++H+E+ +PN  + +F V+   +
Sbjct: 98  SQAFAMLSLISFCVSVSHKESKMPNILRSVFLVLAAVI 135


>AF252604-1|AAF67350.1|  252|Caenorhabditis elegans Gas3/PMP22-like
           protein protein.
          Length = 252

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -1

Query: 428 NKLMAAISFNTFSVSINHEETLVPNSAQGIFQVILKTV 315
           ++  A +S  +F VS++H+E+ +PN  + +F V+   +
Sbjct: 98  SQAFAMLSLISFCVSVSHKESKMPNILRSVFLVLAAVI 135


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -1

Query: 437 LGFNKL-MAAISFNTFSVSINHEETLVPNSAQGIFQVILKTVGLFFRVKIIRDCLLCCCF 261
           LG NK  + +I+F+ F +  N    ++      IF VI  T  L F +  +R  ++  CF
Sbjct: 59  LGLNKAYILSITFSRFFMIKNMMLFIIIMC--NIFGVIRTT--LIFSIAFLR--VIAICF 112

Query: 260 SIIYINIHCWLANYGCNVLIC 198
            + Y N    +  YG + ++C
Sbjct: 113 PVSYYNNRSKIPLYGMSTILC 133


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 378 SRGNPRAEFGTGNFSSDFENGGTIFPCKNY 289
           S GN  + +G  NF+S++ N G      NY
Sbjct: 359 SNGNSNSNYGNSNFNSNYGNNGYNHNGNNY 388


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 428 NKLMAAISFNTFSVSINHEETLVPNSA 348
           NKL   I+ N F  S+NH+ +L  NS+
Sbjct: 709 NKLFLEIAVNKFLKSVNHQTSLSGNSS 735


>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 119 LEAHRVTFSSLNKIIWIRPLETITSFHKSTHYTHNLQANNV 241
           L +      +LN+ ++ + LE +   +   H+TH LQ  N+
Sbjct: 345 LPSQLTELQALNQELYNKVLEQLNVIYDYEHFTHRLQNENI 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,267
Number of Sequences: 27780
Number of extensions: 222015
Number of successful extensions: 540
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)