Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 416 AAISFNTFSVSINHEETLVPNSAQGIFQVILKTVGLFF 303
           A++   +FSV   + E L+P  A+   QV+  T   FF
Sbjct: 29  ASVEQPSFSVHQVYPENLIPRLAKKAIQVLGVTEKEFF 66


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = -1

Query: 257 IIYINIHCWLANYGCNVL 204
           ++ + + CWL  + CN++
Sbjct: 624 VLGVFLICWLPFFTCNIM 641


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 27  SFLIQ*HFNVTCPYTDTTH 83
           S +++ H N TC  T++ H
Sbjct: 338 STIVRNHLNSTCSVTNSPH 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,917
Number of Sequences: 438
Number of extensions: 3070
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)