Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P...    40   0.001
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    40   0.001
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    29   2.5  
At5g07150.1 68418.m00815 leucine-rich repeat family protein cont...    28   3.3  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    28   4.4  

>At5g16070.1 68418.m01878 chaperonin, putative similar to
           SWISS-PROT:P80317 T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +1

Query: 415 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTN 519
           ++ +LNP AE    + AL + I+AAKG+QDV+K+N
Sbjct: 2   SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSN 36


>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +1

Query: 415 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTN 519
           ++ +LNP AE    + AL + I+AAKG+QDV+K+N
Sbjct: 2   SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSN 36


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 507 YILNSFSCGYIYSKCLCSTSELGF 436
           +I+ S+  G +Y  C C +S+LG+
Sbjct: 630 FIMKSYDGGEVYCSCYCVSSQLGY 653


>At5g07150.1 68418.m00815 leucine-rich repeat family protein
          contains weak similarity to LRR receptor-like protein
          kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
          contains Pfam PF00560 domain Leucine Rich Repeat
          Length = 553

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 2  FFFFFFRYIVPHTMTF 49
          FF FFF + +PH +TF
Sbjct: 14 FFIFFFLFFLPHNLTF 29


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 272 CCCFSIIYINIHCWLANYGCNVLICGRKLLFLKV 171
           CC   +++I  +CW+ + G N+  C  KL  L +
Sbjct: 253 CCDEILLWIFYYCWVCDCGMNI-ACVEKLPLLSI 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,362
Number of Sequences: 28952
Number of extensions: 194070
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)