Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A06f
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.37 
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    25   4.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   5.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   7.9  

>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 411 LRNLPPVQFWTQHFSLLGCPLSVSCLFSICFGLFCTLFRGA*NPFSIIRSS 259
           L+N+ P   W + F++   P+S+ C+FSI F L   L +      + IRS+
Sbjct: 603 LQNMDPAAGWGEWFAV-SIPVSLLCIFSIWFLLSFGLLKDEHITLAKIRST 652


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 257 QLDLIIEKGFYAPRNNVQNNPKQIENKQETDRGQPRREK 373
           +LDL IE G Y  +   +   K+ E K++    +  +EK
Sbjct: 270 KLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEK 308


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 105  QTFFYSFCLIFLHSSSSL 52
            QTFFY+F  IFL +  S+
Sbjct: 1457 QTFFYNFLTIFLDTLKSI 1474


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 324 KLRTNKKQTGDNREGKNVGSKIEPEASSAS 413
           K++TN  +   N+EG N  +K++   S+ S
Sbjct: 61  KMKTNASKIEINKEGSNSNTKLDVTNSTTS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,369
Number of Sequences: 5004
Number of extensions: 43621
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)