Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A06f
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1088 - 8554503-8554865,8554964-8554993,8555187-8555247,855... 30 1.1
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71... 29 1.5
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 2.6
08_01_0492 + 4294380-4294568,4294776-4294889 28 4.5
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 27 5.9
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 5.9
01_01_0940 + 7417035-7417124,7417989-7418051,7418632-7418736,741... 27 5.9
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 27 7.8
>01_01_1088 -
8554503-8554865,8554964-8554993,8555187-8555247,
8556313-8556341
Length = 160
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 283 ILCSSEQCTKQPKTN*EQTRNRQGTTEKGKMLGPKLNRRQVPQV 414
+ CS+ K + N E TR+ + GK+LG +L ++ +P V
Sbjct: 88 VACSASSQEKLLRPNMESTRDVAAAAKIGKLLGERLLQKGIPAV 131
>12_01_0089 -
707260-707317,707626-708050,708663-709621,710223-710408,
710502-710604,710701-710883,710932-711012,711072-711164,
711650-711832,713751-713966
Length = 828
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 398 LRFNFGPNIFPFSVVPC-LFLVCSQFVLGCFVHCSEE 291
LRFN G +FPF VP +L L F H S+E
Sbjct: 65 LRFNVGCQVFPFGSVPLKTYLPDGDIDLTAFGHSSDE 101
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +2
Query: 299 NNVQNNPKQIENKQETDRGQPRREKCWVQN*T--GGKFRKSSKS 424
NN PK QE QPR E WV + GK+ + KS
Sbjct: 765 NNTSGQPKPFFQSQEAAVPQPRNENTWVYHGRPGDGKYGTTDKS 808
>08_01_0492 + 4294380-4294568,4294776-4294889
Length = 100
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 287 YAPRNNVQNNPKQIENKQETDRGQPRREKCWVQN*TGGK 403
+A N ++ +++EN Q R PR E+ ++ GGK
Sbjct: 53 FAVNNTAASSSEEVENVQMRTRAMPRSERPVLREGNGGK 91
>03_05_0884 -
28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 357 CPLSVSCLFSICFGLFCTLFRGA*NPFSIIRSSCSVINFFW 235
C LS IC LFCTL ++++ SC +I F W
Sbjct: 314 CILSSWRKLKICEELFCTLL-------NVVKLSCEIIEFGW 347
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 283 ILCSSEQCTKQPKTN*EQTRNRQGTTEKGKMLGPKLNRRQVPQV 414
+ CS+ K + + E TR+ + GK+LG +L R +P V
Sbjct: 42 VACSASSQEKLLRPSMESTRDVAAAAKIGKLLGERLLFRGIPAV 85
>01_01_0940 +
7417035-7417124,7417989-7418051,7418632-7418736,
7419066-7419097,7419173-7419317,7419760-7419945,
7420134-7420224,7420333-7421021
Length = 466
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 317 PKQIENKQETDRGQPRREKCWVQN*TGGKFRKSSKSTRTNLKIQKQC 457
PK++EN+Q T G P + C QN + G+ + +T +K Q +C
Sbjct: 55 PKEVENEQRTVPGIP--QTCNTQNTSNGR----TNTTEVPVKGQNKC 95
>03_02_0932 + 12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 131 MNPVHFREFSHPHLESILDN 190
++PV F EFS P+L+ I+D+
Sbjct: 1073 LSPVDFEEFSLPYLKQIVDS 1092
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,214
Number of Sequences: 37544
Number of extensions: 261713
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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