Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A06f
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)                     46   1e-05
SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.12 
SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)                   30   0.85 
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   3.4  
SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
          Length = 501

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 71  KKMRQKE*KKVCDYGEKCYRMNPVHFREFSH 163
           K+ R K+ K +C YG KCYR NPVH  E+ H
Sbjct: 32  KRKRSKDEKPLCKYGSKCYRKNPVHMEEYRH 62


>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +2

Query: 95  KKVCDYGEKCYRMNPVHFREFSHP 166
           KKVC YG KCY+ NP H + F HP
Sbjct: 299 KKVCMYGSKCYQTNPDHMKNFLHP 322


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 458 NIVFVFSGLSGYFLMTCGTCLRFNFGPNIFPFSVVPCLFL 339
           +I+++FSG+ GY +       +   GP+   F ++ CLF+
Sbjct: 710 SIIYIFSGIGGYLISAILIPYQVEVGPSGSMFGIIACLFV 749


>SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)
          Length = 283

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 301 QCTKQPKTN*EQTRNRQGTTEKGKMLGPKLNRRQVP-QVIKKYPDK 435
           Q +++ KT+  Q +++Q T +  +   PK++++Q P Q   K  DK
Sbjct: 116 QASRKKKTSKPQDQDKQSTDQDKQATSPKISKQQAPRQASNKQQDK 161


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 345  QTGDNREGKNVGSKIEPEASSASHQKVPG 431
            Q+ +++EGK  GS+   EASS S    PG
Sbjct: 1410 QSKESKEGKRNGSRFSAEASSISSTPNPG 1438


>SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 309 KTTQN-KLRTNKKQTGDNREG-KNVGSKIEPEASSASH 416
           KTT + K+ T +  +G  ++  K    K EPE S ASH
Sbjct: 107 KTTSDAKVSTRRNSSGGKKDSEKPTTKKTEPETSEASH 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,938,606
Number of Sequences: 59808
Number of extensions: 316465
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)