Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A06f
(476 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041144-1|AAH41144.1| 511|Homo sapiens chromosome 2 open readi... 42 8e-04
AC105054-1|AAY24113.1| 243|Homo sapiens unknown protein. 42 8e-04
AY438664-1|AAR05447.1| 1203|Homo sapiens patched homolog 2 (Dros... 30 4.8
AY359016-1|AAQ89375.1| 1203|Homo sapiens Patched 2 protein. 30 4.8
AY358555-1|AAQ88919.1| 1211|Homo sapiens Patched 2 protein. 30 4.8
AL592166-5|CAI13000.1| 1203|Homo sapiens patched homolog 2 (Dros... 30 4.8
AL136380-1|CAI23127.1| 1203|Homo sapiens patched homolog 2 (Dros... 30 4.8
AF119569-1|AAD17260.1| 1146|Homo sapiens patched 2 protein. 30 4.8
AF091501-1|AAC79847.1| 1203|Homo sapiens receptor protein patche... 30 4.8
AF087651-1|AAD25953.1| 1203|Homo sapiens patched 2 protein. 30 4.8
>BC041144-1|AAH41144.1| 511|Homo sapiens chromosome 2 open reading
frame 13 protein.
Length = 511
Score = 42.3 bits (95), Expect = 8e-04
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 104 CDYGEKCYRMNPVHFREFSHP 166
C YG CYR NPVHF+ FSHP
Sbjct: 379 CMYGANCYRKNPVHFQHFSHP 399
Score = 33.5 bits (73), Expect = 0.39
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 104 CDYGEKCYRMNPVHFREFSHPHL--ESILDNHASGGXYPIPDKYNLQKKLITEQ 259
C YG CYR NP H E+ H L ++LD P++Y+L + ++
Sbjct: 421 CPYGPSCYRKNPQHKIEYRHNTLPVRNVLDE--DNDNVGQPNEYDLNDSFLDDE 472
>AC105054-1|AAY24113.1| 243|Homo sapiens unknown protein.
Length = 243
Score = 42.3 bits (95), Expect = 8e-04
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 104 CDYGEKCYRMNPVHFREFSHP 166
C YG CYR NPVHF+ FSHP
Sbjct: 111 CMYGANCYRKNPVHFQHFSHP 131
Score = 33.5 bits (73), Expect = 0.39
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 104 CDYGEKCYRMNPVHFREFSHPHL--ESILDNHASGGXYPIPDKYNLQKKLITEQ 259
C YG CYR NP H E+ H L ++LD P++Y+L + ++
Sbjct: 153 CPYGPSCYRKNPQHKIEYRHNTLPVRNVLDE--DNDNVGQPNEYDLNDSFLDDE 204
>AY438664-1|AAR05447.1| 1203|Homo sapiens patched homolog 2
(Drosophila) protein.
Length = 1203
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
>AY359016-1|AAQ89375.1| 1203|Homo sapiens Patched 2 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
>AY358555-1|AAQ88919.1| 1211|Homo sapiens Patched 2 protein.
Length = 1211
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
>AL592166-5|CAI13000.1| 1203|Homo sapiens patched homolog 2
(Drosophila) protein.
Length = 1203
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
>AL136380-1|CAI23127.1| 1203|Homo sapiens patched homolog 2
(Drosophila) protein.
Length = 1203
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
>AF119569-1|AAD17260.1| 1146|Homo sapiens patched 2 protein.
Length = 1146
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
>AF091501-1|AAC79847.1| 1203|Homo sapiens receptor protein patched 2
protein.
Length = 1203
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
>AF087651-1|AAD25953.1| 1203|Homo sapiens patched 2 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 4.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 396 PVQFWTQHFSLLGCPLSVSCLFSICFGLFCTL 301
P FW Q+ L C L C+ +C L C L
Sbjct: 950 PFLFWEQYLGLRRCFLLAVCILLVCTFLVCAL 981
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,754,734
Number of Sequences: 237096
Number of extensions: 1518196
Number of successful extensions: 3224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3224
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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