Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A06f
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23560.1 68416.m02964 MATE efflux family protein similar to r...    29   1.2  
At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT...    27   5.0  
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ...    27   6.6  
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi...    27   6.6  
At1g02630.1 68414.m00213 equilibrative nucleoside transporter, p...    27   6.6  
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ...    27   8.7  
At4g28690.1 68417.m04099 expressed protein                             27   8.7  
At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF...    27   8.7  
At4g01090.1 68417.m00147 extra-large G-protein-related contains ...    27   8.7  
At2g01680.1 68415.m00095 ankyrin repeat family protein contains ...    27   8.7  

>At3g23560.1 68416.m02964 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 477

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 441 FRFVRVLFDDLRNLPPVQFWTQHFSLLGCPLSVSCLFSICFGLFCTLF 298
           F F+  L   L  L    F  + + +LG  L  SC+ S+ F +  T+F
Sbjct: 91  FAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIF 138


>At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT22)
           / HD-ZIP protein 22 identical to homeobox-leucine zipper
           protein HAT22 (HD-ZIP protein 22) (SP:P46604)
           [Arabidopsis thaliana]
          Length = 278

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 236 QKKL-ITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRGQPRREKCWVQN*TGGKFRK 412
           +KKL +T+Q   ++E  F   + +   NPKQ +        +PR+ + W QN    + R 
Sbjct: 125 RKKLRLTKQQSALLEDNF---KLHSTLNPKQKQALARQLNLRPRQVEVWFQN---RRART 178

Query: 413 SSKSTRTNLKIQKQCFQIM 469
             K T  + +  K+C + +
Sbjct: 179 KLKQTEVDCEFLKKCCETL 197


>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
           protein 
          Length = 144

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +2

Query: 209 YPIPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQN--NPKQIENKQ----ETDRGQPRRE 370
           YP+  KYNL +KL  E  D + E+      ++++N    K+I+ KQ    ET+      +
Sbjct: 76  YPLRPKYNLAEKLWYE--DYLREESLLIEADDLENKQKKKKIKEKQINVTETNLHNKENQ 133

Query: 371 KCWV 382
             WV
Sbjct: 134 FTWV 137


>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 530

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 273 SKRDSM--LLGTMYKTTQNKLRTNKKQTGDNREGKNVGSKIEPE 398
           SKR S+  ++G +    Q  ++T+  QT    EGK V  +++PE
Sbjct: 117 SKRFSLNGVMGNIIVKPQPAVKTDVTQTKSRWEGKPVNHRLDPE 160


>At1g02630.1 68414.m00213 equilibrative nucleoside transporter,
           putative (ENT8) identical to putative equilibrative
           nucleoside transporter ENT8 [Arabidopsis thaliana]
           GI:28207664; contains similarity to SWISS-PROT:O54699
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type)
           [Rattus norvegicus]; contains Pfam profile PF01733:
           Nucleoside transporter
          Length = 389

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 344 FLVCSQFVLGCFVHCSEEHRIP 279
           F+V S  +L CF+ C+  H++P
Sbjct: 190 FIVSSTILLCCFISCNVLHKLP 211


>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
           protein Mei2-like protein - Arabidopsis thaliana,
           EMBL:D86122
          Length = 907

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 161 HPHLESILDNHASGGXY 211
           HPH    LDN ASG  Y
Sbjct: 480 HPHFPDYLDNFASGSPY 496


>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = +2

Query: 113 GEKCYRMNPVHFREFSHPHLESILDNHASG--GXYPIPDKYNLQKKLITEQLDLIIEKGF 286
           G +  +   V     S PH    L NH SG     P P        ++T +       G 
Sbjct: 226 GHRTEQSRTVQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRR----PSNGV 281

Query: 287 YAPRNNVQN 313
           Y P N+VQN
Sbjct: 282 YPPENSVQN 290


>At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF21)
           identical to heat shock transcription factor 21
           [Arabidopsis thaliana] GI:3399765; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 401

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 323 QIENKQETDRGQPRREKCW 379
           Q+E K + D+   R EKCW
Sbjct: 361 QLERKDDKDKAGVRTEKCW 379


>At4g01090.1 68417.m00147 extra-large G-protein-related contains
           weak similarity to extra-large G-protein [Arabidopsis
           thaliana] gi|3201682|gb|AAC19353
          Length = 714

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +2

Query: 113 GEKCYRMNPVHFREFSHPHLESILDNHASGGXYPIPDKYNLQKKLITEQLDLIIEKGFYA 292
           G+ C  + P    EFSHP    +LDN A+G      D +   ++L     +L++ +G   
Sbjct: 613 GKPCLGIIPPFIEEFSHP----MLDNCAAGN----TDVFVNGRELHKRDFELLVGRGLPR 664

Query: 293 PRN 301
            +N
Sbjct: 665 DKN 667


>At2g01680.1 68415.m00095 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 532

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 369 SLLGCPLSVSCLFSICFGLFCTLFRGA*NPFSIIRSSCSVINFFW 235
           +LLG P+ V  L S+C+ +F   FR   +    IR   S  +F W
Sbjct: 468 TLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRIRRGSSK-SFSW 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,670,045
Number of Sequences: 28952
Number of extensions: 228339
Number of successful extensions: 652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)