Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A04f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9SX91 Cluster: F16N3.12 protein; n=3; Magnoliophyta|Re...    35   0.98 
UniRef50_A6CFH9 Cluster: 2-dehydro-3-deoxyphosphooctonate aldola...    33   4.0  

>UniRef50_Q9SX91 Cluster: F16N3.12 protein; n=3; Magnoliophyta|Rep:
           F16N3.12 protein - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 147

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +3

Query: 114 AFVV-CCMLVLVSEMLIWRIDLSVKIVKMLVYNVVDR*VFSN--RWLR 248
           AFVV CC+  L + +LI  +  ++ +  +LVY++  R  F N  RWLR
Sbjct: 24  AFVVFCCLFWLCAILLIGSLTTTLTVGALLVYDITKRQTFDNVLRWLR 71


>UniRef50_A6CFH9 Cluster: 2-dehydro-3-deoxyphosphooctonate aldolase;
           n=1; Planctomyces maris DSM 8797|Rep:
           2-dehydro-3-deoxyphosphooctonate aldolase - Planctomyces
           maris DSM 8797
          Length = 563

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 397 IRNLWHAHKLNKYQRIKGIFCFFFSIFNLETNEE*PSKTSVRKEIIEGTA 248
           + NL   H   +   I G+FCF   I      E+ PS ++  KE  +GTA
Sbjct: 3   LSNLIRRHSAPRLGMISGVFCFALLISISGCKEQTPSSSTANKEKSQGTA 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,836,576
Number of Sequences: 1657284
Number of extensions: 7411427
Number of successful extensions: 17203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17201
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)