Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208...    29   3.0  
03_05_0258 - 22442527-22443927                                         27   6.9  

>03_01_0269 +
           2080338-2080508,2081086-2081335,2081432-2082648,
           2082933-2083083,2083247-2083563
          Length = 701

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 236 IRKHSSVNNVIYQHFNNFNT 177
           I KHSS N  I QH NN +T
Sbjct: 22  ISKHSSTNGEIKQHINNIDT 41


>03_05_0258 - 22442527-22443927
          Length = 466

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 406 LPEIRNLWH-AHKLNKYQRIKGIFCFFFSIFN 314
           LPE+ N WH   ++N YQ+ + +     S+FN
Sbjct: 275 LPEVANYWHQVIRINDYQKSRFVNRVVSSMFN 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,128,864
Number of Sequences: 37544
Number of extensions: 189856
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)