Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.47 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.47 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   2.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   2.5  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   5.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 117 FVVCCMLVLVSEMLIW 164
           ++ CCMLV+VS +  W
Sbjct: 249 YIPCCMLVIVSWVSFW 264


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 117 FVVCCMLVLVSEMLIW 164
           ++ CCMLV+VS +  W
Sbjct: 249 YIPCCMLVIVSWVSFW 264


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 215 NNVIYQHFNNFNT*VYAPY*HFRYQN 138
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 215 NNVIYQHFNNFNT*VYAPY*HFRYQN 138
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 215 NNVIYQHFNNFNT*VYAPY*HFRYQN 138
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 215 NNVIYQHFNNFNT*VYAPY*HFRYQN 138
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 215 NNVIYQHFNNFNT*VYAPY*HFRYQN 138
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 215 NNVIYQHFNNFNT*VYAPY*HFRYQN 138
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 215 NNVIYQHFNNFNT*VYAPY*HFRYQN 138
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 147 SEMLIWRIDLSVK 185
           ++M+IW +D S+K
Sbjct: 18  NQMMIWALDCSIK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,774
Number of Sequences: 438
Number of extensions: 2611
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)