Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A03f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K815 Cluster: Mitochondrial intermediate peptidase, p...    34   2.3  
UniRef50_Q96MV8-2 Cluster: Isoform 2 of Q96MV8 ; n=3; Coelomata|...    32   9.2  
UniRef50_Q11UJ2 Cluster: Chromosome segregation ATPase; intracel...    32   9.2  
UniRef50_A5YS58 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_A5K815 Cluster: Mitochondrial intermediate peptidase,
            putative; n=3; Plasmodium|Rep: Mitochondrial intermediate
            peptidase, putative - Plasmodium vivax
          Length = 988

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = -2

Query: 511  SILLYITYKCLDTLNYCL*YLNSLFEKKSHPFFFNFVITSVISILKIT*VLHLLKLSSIV 332
            SI+  I Y CL   + C+   N L EKK    +F+ V    I IL++   +H  K + +V
Sbjct: 832  SIIDQIFY-CLSEKSSCISERNELIEKKIKE-YFSGVYYRDIFILELFPQIHFSKTTHLV 889

Query: 331  EYSTNIFFY 305
             Y  N F Y
Sbjct: 890  HYPANYFCY 898


>UniRef50_Q96MV8-2 Cluster: Isoform 2 of Q96MV8 ; n=3;
           Coelomata|Rep: Isoform 2 of Q96MV8 - Homo sapiens
           (Human)
          Length = 143

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 185 LIFRVISWSYFVFVSRICTVVYCSLY 108
           +I  V+ WSY+ +V  +C V+Y  LY
Sbjct: 27  VIVLVVLWSYYAYVFELCLVIYLILY 52


>UniRef50_Q11UJ2 Cluster: Chromosome segregation ATPase;
           intracellular signalling protein; n=1; Cytophaga
           hutchinsonii ATCC 33406|Rep: Chromosome segregation
           ATPase; intracellular signalling protein - Cytophaga
           hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 596

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 235 VFYLFIYLFNQILYVAIKLNIFLDKRK-C*YYILLWTIILVNVV 363
           VFY F+YL   IL   +   I+L   K   ++IL +T+I+++ V
Sbjct: 270 VFYPFVYLIPFILIYLVSFQIYLKGEKYARFFILAYTMIIISFV 313


>UniRef50_A5YS58 Cluster: Putative uncharacterized protein; n=1;
           uncultured haloarchaeon|Rep: Putative uncharacterized
           protein - uncultured haloarchaeon
          Length = 1915

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +2

Query: 92  TLFS*DTDYNIQRCRFEIRKQNNSKRSHEISINLCPEIVSIRSN 223
           TL+  DT+ NI  C FE+ KQ   K S     +L P+I  IR N
Sbjct: 756 TLYVTDTEGNIDDCTFEVTKQLGGKTS-----SLQPQITDIRVN 794


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 432,653,250
Number of Sequences: 1657284
Number of extensions: 7729283
Number of successful extensions: 17428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17423
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)