Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    28   0.73 
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    28   0.97 
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    27   2.2  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   3.0  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   3.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   5.2  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 43  CSVAQSIVFSRPRLKLNLVQLRYRLQYTTVQIRDTK 150
           C V Q ++  R  L L  + L+++    TV I++TK
Sbjct: 163 CQVRQKVLHKRTFLYLEQIILKHKAHMNTVNIKETK 198


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/39 (25%), Positives = 27/39 (69%)
 Frame = -2

Query: 484 CLDTLNYCL*YLNSLFEKKSHPFFFNFVITSVISILKIT 368
           C++ L++   +LN+   ++++ ++F F+++ V+S L +T
Sbjct: 204 CVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVLSALYLT 242


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 72  STAAEIKPCSVEIQTTIYNGADSRYENKITPRDHTKYQSICVPKS 206
           S++  ++  S    TTIY+   S + + ITP   +   S  VP S
Sbjct: 20  SSSVSVETGSCVRYTTIYSSGSSEFTSTITPETPSSSSSTFVPIS 64


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = +1

Query: 76  PRLKLNLVQLRYRLQYTTVQIRDTKTK*LQEITRNINQSVSRNRFNS*QYHISVFYLFIY 255
           PRL+ +L      + YT   I +   +  Q+    IN      R N  QY IS   L   
Sbjct: 392 PRLETDLADDLKEMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNVIQYQISRLVLKDI 451

Query: 256 LFNQILYVAIKLNI 297
            FN  L + +  NI
Sbjct: 452 FFN--LQIGVTFNI 463


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 291 EYIFG*KKMLVLYSTMDDNFSKCSTYVIFRIEITLVIT 404
           EY F    + +LY  MDD F  C+ +VIF I   L I+
Sbjct: 100 EYFFFASTLSILY--MDD-FPTCAYFVIFSISFLLGIS 134


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 268 ILYVAIKLNIFLDKRKC*YYILLWTIILVNV 360
           IL++ I+L  FL  + C YY L W+I   N+
Sbjct: 330 ILHLLIRLCDFL--KNCGYYELAWSIFQANM 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,444
Number of Sequences: 5004
Number of extensions: 37642
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)