Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014)                  32   0.33 
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)           28   4.1  

>SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014)
          Length = 751

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 91  NLVQLR-YRLQYTTVQIRDTKTK*LQEITRNINQSVSRNR 207
           N++Q   ++ QYT VQ+++  TK LQ+  R  NQS+   R
Sbjct: 23  NVIQKSSFKKQYTVVQLKENLTKILQQSERGRNQSLGLKR 62


>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 185 LIFRVISWSYFVFVSRICTV 126
           LI R + +SYF+F+S +CT+
Sbjct: 699 LIIRAVMFSYFIFMSLLCTL 718


>SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 185 LIFRVISWSYFVFVSRICTV 126
           LI R + +SYF+F+S +CT+
Sbjct: 638 LIIRTVMFSYFIFMSLLCTL 657


>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
          Length = 925

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 16  CFITKNRTKCSVAQSIVFSRPRLKLNLVQLRYRLQYTTVQ 135
           CF    R KCSV + + +S  RL      LR    +TTVQ
Sbjct: 168 CFENHRRVKCSVCKKVGWSMDRLVCETCGLR---SFTTVQ 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,534
Number of Sequences: 59808
Number of extensions: 242987
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)