Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical
           protein T22B2.5 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 179 FRVISWSYFVFVSRICTVVYCSL 111
           FRVI W + VF+  +C  VY SL
Sbjct: 131 FRVIFWIFIVFI-HLCQAVYVSL 152


>AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical
           protein C39B5.2 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 315 MLVLYSTMDDNFSKCSTYVIFRIEITLVITKLKKKGWLF 431
           +++ YS +DD F KC    + RI   L+ +++KK+  LF
Sbjct: 225 IIINYSFLDDVFLKCPNSQVARI-YGLIDSRIKKECCLF 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,561,749
Number of Sequences: 27780
Number of extensions: 204082
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)