Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 YIFG*KKMLVLYSTMDDNFSKCSTYVI 374
           Y+   K  L++Y   DD+F + S++ +
Sbjct: 203 YMVDNKNTLIIYQNADDSFHRLSSHTL 229


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 111 QTTIYNGADSRYENKITPRDHTKYQSICVPKSF 209
           Q  I+ G D      +TP D  KY  I  P  F
Sbjct: 384 QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 111 QTTIYNGADSRYENKITPRDHTKYQSICVPKSF 209
           Q  I+ G D      +TP D  KY  I  P  F
Sbjct: 384 QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 416


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 111 QTTIYNGADSRYENKITPRDHTKYQSICVPKSF 209
           Q  I+ G D      +TP D  KY  I  P  F
Sbjct: 322 QHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCF 354


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 321 VLYSTMDDNFSKCSTYVIFRI 383
           VL++ + D FS C T V+  +
Sbjct: 307 VLFTMILDTFSICVTVVVLNV 327


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 120 IYNGADSRYENKITPRDHTKY 182
           +YN AD  YE  +  +   KY
Sbjct: 122 LYNNADGNYEVTLMTKATLKY 142


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 327 YSTMDDNFSKCSTYV 371
           Y T +DN   C++YV
Sbjct: 798 YPTREDNLLVCNSYV 812


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,854
Number of Sequences: 438
Number of extensions: 2493
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)