Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27970.1 68417.m04013 C4-dicarboxylate transporter/malic acid...    29   2.5  
At5g12480.1 68418.m01466 calmodulin-domain protein kinase isofor...    28   4.4  
At1g77270.1 68414.m08999 expressed protein                             27   5.8  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    27   5.8  

>At4g27970.1 68417.m04013 C4-dicarboxylate transporter/malic acid
           transport family protein contains Pfam profile PF03595:
           C4-dicarboxylate transporter/malic acid transport
           protein
          Length = 519

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 448 NSLFEKKSHPFFFNFVITSVISILKIT*VLHLLKLSSIVEYSTNIFFY 305
           N    K+ HP FF FV    ++ +  T +     L S + Y  ++F Y
Sbjct: 331 NETLPKELHPVFFLFVAAPAVASMAWTKISASFDLGSRLAYFISLFLY 378


>At5g12480.1 68418.m01466 calmodulin-domain protein kinase isoform 7
           (CPK7) identical to calmodulin-domain protein kinase
           CDPK isoform 7 [Arabidopsis thaliana]
           gi|1399277|gb|AAB03247
          Length = 535

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 79  RLKLNLVQLRYRLQYTTVQIRDTKTK*LQEIT 174
           R K+NL +L+Y LQ    QI DT  + L E T
Sbjct: 377 RGKINLEELKYGLQKAGQQIADTDLQILMEAT 408


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 22  ITKNRTKCSVAQSIVFSRPRLKLNLVQLRYRL 117
           + KN  KCSVA++IV    +++ N+ +L  RL
Sbjct: 131 LAKNPKKCSVAKTIVKKEIKIESNIDELGGRL 162


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 108 IQTTIYNGADSRYENKITPRDHTKYQSICVPK 203
           + TT +  A++ +E  +TP D  K   + +PK
Sbjct: 176 VSTTGFRSAEALFEKAVTPSDVGKLNRLVIPK 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,427,925
Number of Sequences: 28952
Number of extensions: 167748
Number of successful extensions: 328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)