Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.7  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   1.7  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   6.8  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +1

Query: 148 CTCSASRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAV 321
           CTC   R    S       L  +T   IS+CDL DD+ S   +  +   C   E   +
Sbjct: 26  CTCFPKRKKEASERSCFPFLDTET---ISSCDLSDDVLSPKLFAKNSYRCSLKETKCI 80


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/77 (25%), Positives = 41/77 (53%)
 Frame = +1

Query: 181 SVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAVLSYEQVRRLNDVM 360
           S+N  V KLS  ++ + +  D L +++S   Y  S  G    +  A++  + ++R  ++ 
Sbjct: 3   SLNDIVNKLS--SSKIKTRSDALQNLRSYIIY--SRNGNSLNQEDALIIEKAIKRAFELE 58

Query: 361 DEVVAIHGSRQLPYAAR 411
            ++ A HG RQ+  A++
Sbjct: 59  WQISANHGKRQISKASQ 75


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 198 DAHVDALMIWS*SRTGANARRTERVLR 118
           DA +D+L++   ++TGA A + ERV R
Sbjct: 257 DAEIDSLIVSEETKTGATAVQEERVKR 283


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 163 SRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEG--CGAGER 312
           S+P  K   + +  ++  + S++S  + ++     + YTS E G  C  G+R
Sbjct: 291 SKPSKKGSKLKISNITLRSGSVVSLYNRINSQTVRTKYTSIEAGQFCLRGDR 342


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 TSRAKPSRSSARLHLFGFTTRS*ERQHGRHQIESGHR 221
           T + KPS S       GF++ S E++H     ++GH+
Sbjct: 653 TDKRKPSWSRRLAAAIGFSSGSPEKKHVITSSDAGHQ 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,040
Number of Sequences: 5004
Number of extensions: 30724
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)