Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0019 + 22180898-22181476 31 0.56
10_02_0112 + 5385660-5385821,5386337-5386876 31 0.74
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 29 2.3
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 29 3.0
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 28 4.0
07_03_0491 - 18707721-18708179 28 4.0
02_01_0705 - 5259949-5263887,5266207-5266509 28 4.0
03_01_0630 + 4635297-4636220 28 5.2
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 27 6.9
03_05_0094 + 20740373-20740948 27 6.9
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 9.1
03_01_0470 + 3619417-3619572,3619681-3619759,3620017-3620258,362... 27 9.1
01_01_0452 - 3357687-3358332,3358779-3359641 27 9.1
>04_04_0019 + 22180898-22181476
Length = 192
Score = 31.1 bits (67), Expect = 0.56
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 292 GCGAGERHAVLSYEQ--VRRLNDVMDEVVAIH-GSRQLPYAARALTRACSXGCEPAWSWX 462
G ER A+ + Q + LN V + A++ G Q A + R + GCE A+ +
Sbjct: 94 GWSERERAALATCRQLYIEALNVVHSAIHALNTGQTQAYVADMGVVRRAATGCEDAFGFG 153
Query: 463 GRLGGAGV 486
G GG GV
Sbjct: 154 GGGGGGGV 161
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 193 GVIKLSPDTASLISACDLLDDMKSESSYTSSEE 291
G K+SPD +L+S+ ++DDM ESSY + ++
Sbjct: 144 GEEKMSPDDVALLSS--MVDDMNMESSYENDDD 174
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 29.1 bits (62), Expect = 2.3
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +1
Query: 76 FQIYFEANLL*RRRAQNPLGPPRVCTCSASRPDHKSVNMGVIKLSPDTA-SLISA--CDL 246
FQ+Y + N R P G P + +A P H+S++ G+ L+P A ISA +
Sbjct: 31 FQLYIKRN---RASPPPPPGSPTAASAAAVSPIHRSLSRGL--LAPRAALPAISARGASV 85
Query: 247 LDDMKSESSYTSSEEGCGAGERHAV 321
DD +S Y + C A H V
Sbjct: 86 RDD---DSLYYAGLRRCAADPYHPV 107
>09_02_0229 -
6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 238 CDLLDDMKSESSYTSSEEG-CGAGERHAVLSYEQVRRLNDVMDEVV 372
C + D ++S + Y S E CG + S ++RRL+ +MDE V
Sbjct: 609 CRMHDLLRSLAQYLSRGESLCGDPRKLDAFSLSKIRRLSVLMDEEV 654
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 166 RPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSS 285
RPD V + ++ P + + LLDD+K+ SS SS
Sbjct: 507 RPDRDDVELAILDDDPYRYGINNEDMLLDDLKANSSLVSS 546
>07_03_0491 - 18707721-18708179
Length = 152
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 500 HPRTETPAPPSRPXQLQAGSH 438
HPRT+ APP P Q AG++
Sbjct: 23 HPRTDPHAPPETPKQEPAGTN 43
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 341 GGSMTSWTRWWPSTGRG 391
GGS+ W RW + GRG
Sbjct: 1327 GGSLVGWVRWMAARGRG 1343
>03_01_0630 + 4635297-4636220
Length = 307
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 250 DDMKSESSYTSSEEGCGAGERHAVLSYEQVRRLNDVMD 363
+DM + S CG GE+ L+ EQVR L D
Sbjct: 22 EDMAGGHAAQSPSPSCGLGEKKRRLALEQVRALERSFD 59
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 27.5 bits (58), Expect = 6.9
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 145 VCTCSASRPDHKSVNMGVIKLSPDTASLISACDLLDD-MKSES-SYTSSEEGCGAGERHA 318
+C + +HK ++ ++ +S D A L S D LD ++ E SY S +G +
Sbjct: 465 ICFKHLNPEEHKELSSKLV-ISFDEALLTSTLDKLDKGLRDEGISYHSL-----SGRHKS 518
Query: 319 VLS-YEQVRRLNDVMDEVVAIHGSR 390
+ S Y ++ + N MD+V IHG R
Sbjct: 519 LYSIYSKMIKKNLTMDDVHDIHGLR 543
>03_05_0094 + 20740373-20740948
Length = 191
Score = 27.5 bits (58), Expect = 6.9
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 265 ESSYTSSEEGCGAGERHAVLSYEQVRRLNDVM-DEVVAIHGSRQLPYAARALTRACSXGC 441
E+ TSS + + E A +SY + V D + H Q P A R+ + A S
Sbjct: 45 ETPPTSSTDDAMSFEFSAAVSYSSASPASMVFSDGQLRAH---QFP-AVRSSSAASSHVA 100
Query: 442 EPAWSWXGRLGGAG 483
P SW +GG+G
Sbjct: 101 SPVRSWSSSMGGSG 114
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 181 SVNMGVIKLSPDTASLISACDLLDDMKSESSYTS 282
SV G ++SPD+ S+++ C DMK S S
Sbjct: 427 SVKKGQQEMSPDSNSIVNGCHWPRDMKLRSDTRS 460
>03_01_0470 +
3619417-3619572,3619681-3619759,3620017-3620258,
3620804-3621148,3623592-3624116
Length = 448
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 491 TETPAPPS--RPXQLQAGSHPXLQARVSAR 408
T T APPS RP +G+HP L SA+
Sbjct: 136 TRTAAPPSHCRPGPAPSGAHPSLAVASSAQ 165
>01_01_0452 - 3357687-3358332,3358779-3359641
Length = 502
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +1
Query: 145 VC-TCSASRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAV 321
+C T SAS SVN+ V+K P S ++ + S +TS + + ++
Sbjct: 31 ICPTPSASESSQPSVNLSVVKTPPTQPSFVTFSIFANYRVPISLWTSKPVHLKSYTQQSL 90
Query: 322 LSYEQVRRLNDVMDEVVAIHGSRQLPY 402
E + D++D V+ +++L +
Sbjct: 91 DEQEMLELFVDIVDWVLRSGPNKKLSF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,069
Number of Sequences: 37544
Number of extensions: 253847
Number of successful extensions: 1014
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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