Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.027
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                30   1.0  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_14600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_53106| Best HMM Match : PLAT (HMM E-Value=0)                        28   5.4  
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)                  28   5.4  
SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6)                     27   9.4  
SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_5821| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +1

Query: 319 VLSYEQVRRLNDVMDEVVAIHGSRQLP 399
           VL+YEQV RL++V+++VV +HG    P
Sbjct: 9   VLTYEQVHRLDNVLNQVVQVHGRGNFP 35



 Score = 31.9 bits (69), Expect = 0.33
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +2

Query: 383 GRGNFPTLHVRLRELV 430
           GRGNFPTL V LREL+
Sbjct: 30  GRGNFPTLDVHLRELI 45


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +1

Query: 184 VNMGVIKLSPDTAS---LISACDLLDDMKSESSYTSSEEGCGAGERHAVLSYEQVRRLND 354
           VN G++    +TAS   L+S   + D M+S  SY +    C +      LSY Q+    D
Sbjct: 528 VNTGMVSKCNETASNSDLVSGIPVFD-MRSNVSYRNVY--CASCNAATNLSYWQLSIKCD 584

Query: 355 VMDEVVAIHGSRQLPYAARALTRACSXGCEPAWSWXGRLGGAGVSVRGCPP 507
               + A   + +L   AR   R+C+   +P   +  RL    +   GCPP
Sbjct: 585 DSSGISANTTTAELMEYAR---RSCALAYKPRTEFWDRLLSCKIKDSGCPP 632


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +2

Query: 185 STWASSN*VRTPRPSYLPATCSMT*RANRAI----HRQKKG--AVRESVTPCSATSKCG 343
           ++W +S   RT RPS    + +   R  RA+      QKK   AVRE+ T CS  +K G
Sbjct: 818 ASWRNSEEARTDRPSQQLRSLNGEWRLMRALLGDTSEQKKARAAVRETSTKCSVINKVG 876


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +1

Query: 154 CSASRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAVLS 327
           C++  P H  +N      S  T   +  C +  +    S YT   + CG G RH   S
Sbjct: 223 CTSPPPQHGGLNC-TGAFSETTPCNLRPCPINGNYTQWSEYTPCSKTCGGGTRHRTRS 279


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 320 CSATSKCGGSMTSWTRWWP 376
           CS T  C G  + W+RW P
Sbjct: 27  CSVTPSCKGIFSEWSRWGP 45


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 167  DQIIRASTWASSN*VRTPRPSYLPATCSMT 256
            D+  RA T A+S+   TPRP+Y P T   T
Sbjct: 4646 DESERADTGAASSPSTTPRPTYSPTTHKTT 4675


>SB_14600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 127 PLGPPRVCTCSASRPDHKSVNMGVIKLSPD 216
           P+G  R  TC  S+    S N GV K+ PD
Sbjct: 224 PVGARRNLTCHNSKQAASSGNQGVAKIGPD 253


>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1790

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -3

Query: 414  RTCSVGKLPRPVDGHHLVHDVIEPPHLLVAEHGVTLSRTAPFF*RC 277
            +T  VGKL R V GH+  +  ++PP LL   H    SR   +  +C
Sbjct: 968  QTADVGKLNRMVIGHN--NTGVDPPWLLEEVHVDIPSRNEHYVFKC 1011


>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
          Length = 604

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 241 DLLDDMKSESSYTSSEEGCGAGERHAVLSYEQVRRLNDVMDEVVAIHGSRQLPYAARA-- 414
           DL+D   S +S TS++E   +GE+       QV   ND   E+V + G R   + +R   
Sbjct: 157 DLIDTRPSSASSTSTQEVPVSGEQEL---KRQVSFHNDEEKELVQM-GQRMTSFISRPGN 212

Query: 415 LTRACSXGC-EPAWSW 459
           L    S  C +  WSW
Sbjct: 213 LPVELSTTCTQTEWSW 228


>SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 190 MGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCG 300
           MGV++ SPD A +  +  L D++  +S+ T  EE  G
Sbjct: 368 MGVVRESPDEAEMAKSLSLPDNL--DSTETLDEENLG 402


>SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6)
          Length = 326

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 282 RCIARFALHVIEQVAGRYEGRGVRTQFD 199
           +C+ RF + +  Q A +++G+G +T F+
Sbjct: 199 KCLERFRIFMPSQAAIQFKGKGKKTAFE 226


>SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 301 AGERHAVLSYEQVRRLNDVMDEVVAIHGSRQLPYAA 408
           A E HA+ S  QV+R+   +DE+  ++ ++Q  Y A
Sbjct: 218 ASELHAMSSNAQVQRMKKQVDEMERMYHAQQKGYQA 253


>SB_5821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 178 KSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAVLS--YEQVRRLN 351
           +++ MG      +T S+       +D KSE+     EE  G  ++HA+L    EQ ++L 
Sbjct: 465 RTIAMGDDSTVENTPSVSMQSVGTEDAKSETLSVQDEELQGLQQQHALLQKMLEQQQQLK 524

Query: 352 DVMDEVVAI 378
           D+     A+
Sbjct: 525 DLQSRQAAL 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,571
Number of Sequences: 59808
Number of extensions: 275121
Number of successful extensions: 856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)