Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    27   8.1  

>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 118 AQNPL-GPPRVCTCSASRPDHKSV-NMGVIKLSPDTASL-ISACDLLDDMKSESSYTSSE 288
           A +PL  P ++       P+ KS  +   ++L+PD     + +CDLL+D + ESS    E
Sbjct: 291 AASPLKSPAKIEKPRLEEPEQKSKRSRRSLRLNPDAIEPPVKSCDLLEDEREESSSKKRE 350


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = +2

Query: 119 RKTLSVLRAFAPVRLHD-QIIRASTWASS------N*VRTPRPSYLPATCSM 253
           R  L ++  F   +LHD ++    +WA +      N   TPRPS LPA   M
Sbjct: 5   RLLLLLIIPFLECQLHDLEVTTPPSWAPTGRLNQFNGFATPRPSLLPANAQM 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,189,319
Number of Sequences: 27780
Number of extensions: 185925
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)