Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10440.1 68417.m01716 dehydration-responsive family protein s...    29   2.5  
At1g33170.1 68414.m04096 dehydration-responsive family protein s...    29   2.5  
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing...    27   7.7  
At4g29750.1 68417.m04237 expressed protein contains Pfam domain,...    27   7.7  
At4g27610.2 68417.m03968 expressed protein                             27   7.7  
At4g27610.1 68417.m03967 expressed protein                             27   7.7  
At4g01870.1 68417.m00245 tolB protein-related contains weak simi...    27   7.7  

>At4g10440.1 68417.m01716 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 367 VVAIHGSRQLPYAARALTRACSXGCEPAW 453
           ++ I GSR+LPY ARA   A    C   W
Sbjct: 263 IIGIMGSRRLPYPARAFDLAHCSRCLIPW 291


>At1g33170.1 68414.m04096 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 639

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 367 VVAIHGSRQLPYAARALTRACSXGCEPAW 453
           ++ I GSR+LPY ARA   A    C   W
Sbjct: 280 IIGIMGSRRLPYPARAFDLAHCSRCLIPW 308


>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
           protein similar to GCN4-complementing protein (GCP1)
           GI:6465806 from [Arabidopsis thaliana]
          Length = 850

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 130 LGPPRVCTCSASRPDHKSVNMGVI 201
           LG  R   C A  PD  S+N+GV+
Sbjct: 530 LGNERCADCGAPEPDWASLNLGVL 553


>At4g29750.1 68417.m04237 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 776

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 277 TSSEEGCGAGERHAVLSYEQVRRLNDVMDEVV 372
           TSSE+G  +   H V + ++ RR ND  D  V
Sbjct: 178 TSSEQGIQSSSFHDVTTVDRYRRDNDSSDRAV 209


>At4g27610.2 68417.m03968 expressed protein 
          Length = 334

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 256 MKSESSYTSSEEGCGAGERHAVLSYEQVRRLNDVMD 363
           M SES+Y S E+    GER  +L  ++V  L +V+D
Sbjct: 265 MDSESNYESQEKSLRDGERVEMLR-KEVSELKEVID 299


>At4g27610.1 68417.m03967 expressed protein 
          Length = 334

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 256 MKSESSYTSSEEGCGAGERHAVLSYEQVRRLNDVMD 363
           M SES+Y S E+    GER  +L  ++V  L +V+D
Sbjct: 265 MDSESNYESQEKSLRDGERVEMLR-KEVSELKEVID 299


>At4g01870.1 68417.m00245 tolB protein-related contains weak
           similarity to TolB protein precursor (Swiss-Prot:P44677)
           [Haemophilus influenzae]
          Length = 652

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 261 LHVIEQVAGRYEGRGVRTQFDDAHVDALMIWS 166
           L++++ V G   G G+R   D   +D +  WS
Sbjct: 471 LYIVDAVNGESNGGGIRRLTDGPWIDTMPCWS 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,702,121
Number of Sequences: 28952
Number of extensions: 176042
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)