Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304A01f
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       31   0.36 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              31   0.64 
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.84 
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   2.6  
SB_33628| Best HMM Match : BRF1 (HMM E-Value=1.8)                      28   3.4  
SB_32883| Best HMM Match : K-box (HMM E-Value=0.032)                   27   5.9  
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)           27   7.8  
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)               27   7.8  

>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 282 NFSSALKEIGDVENWARSIENDMK-IITDTLERAYE 386
           +FS+ L   G+VE+W   +EN M+  + DTL +A E
Sbjct: 479 DFSTDLYPTGNVEDWLLEVENTMRNSLRDTLRKALE 514


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
 Frame = +3

Query: 72   QAAKRVVQEQK---RKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAIN 242
            +AAK   +++K   ++E + A NDL    ++H  V      L ++  DA  +L      N
Sbjct: 1260 EAAKDRAEKEKQAIKEELVQANNDLADLEIEHDTVQKDYDSLKKQLADANERLAKAREEN 1319

Query: 243  FSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLE 374
             + Q QQ + L     S  +E  + +N   +++   + I   LE
Sbjct: 1320 MNLQ-QQIVELKMRLESEERESAEKDNLTDNLQASKEYIEGQLE 1362


>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 25/120 (20%), Positives = 50/120 (41%)
 Frame = +3

Query: 57   EHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGA 236
            +H+   A +++     + E    AN      ++ L   V Q    ++  +A  + L +  
Sbjct: 695  QHETSAAEQKLASLAAKLEEAFVANSAKTKEIEELTSRVNQLIETKETSEAHVQQLKENL 754

Query: 237  INFSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEKPSSSQ 416
             N  +  ++  T ++  SSALKE    EN    +E  M   + ++     K ++  +S Q
Sbjct: 755  ENGQEVLKRKDTTIQEISSALKE---AENKLSGVEKQMAEKSSSINALELKVEDLEASIQ 811


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 183  YLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIIT 362
            + N KK  AE +   +  +N   + Q  +TLV    +  +   D +   R ++ +++   
Sbjct: 1903 FANSKKESAELRARLEALLNEKSRLQNEVTLVNRKYTEYRSSIDDKRDKRKVDPNLQKKL 1962

Query: 363  DTLERAYEKA 392
              LE +Y+KA
Sbjct: 1963 KDLEESYQKA 1972


>SB_33628| Best HMM Match : BRF1 (HMM E-Value=1.8)
          Length = 369

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 168 GVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWL 269
           GVA+ Y   ++  AE K LH+ A     + Q+WL
Sbjct: 50  GVAKVYETVQRQGAELKALHEEAKKKQAEYQEWL 83


>SB_32883| Best HMM Match : K-box (HMM E-Value=0.032)
          Length = 192

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 159 LNVGVAQAYLNQKKLDAEAKLLHQGA 236
           L+  +AQ+ + Q+ L+ EAK LHQ A
Sbjct: 38  LDYSIAQSNVRQQSLNCEAKKLHQQA 63


>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
          Length = 657

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 204 DAEAKLLHQGAINFSKQTQQWLT-LVENFSSALKEIGDVENWARSIENDMKIITDTLERA 380
           D + + + + A+++ +  +  L  L E      + I DVE  AR ++    +IT  + +A
Sbjct: 50  DHKYQFIRESAVSYREYLRSQLNRLYEQAQPLTESIKDVEKAARGLQEREDVITSEIHKA 109

Query: 381 YE 386
            E
Sbjct: 110 TE 111


>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
          Length = 662

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 204 DAEAKLLHQGAINFSKQTQQWLT-LVENFSSALKEIGDVENWARSIENDMKIITDTLERA 380
           D + + + + A+++ +  +  L  L E      + I DVE  AR ++    +IT  + +A
Sbjct: 213 DHKYQFIRESAVSYREYLRSQLNRLYEQAQPLTESIKDVEKAARGLQEREDVITSEIHKA 272

Query: 381 YE 386
            E
Sbjct: 273 TE 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,594
Number of Sequences: 59808
Number of extensions: 216500
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)