Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304A01f
(472 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-8|CAA83011.1| 129|Caenorhabditis elegans Hypothetical pr... 138 1e-33
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 33 0.10
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 33 0.10
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 1.7
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 1.7
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 29 1.7
L14331-8|AAA28100.1| 586|Caenorhabditis elegans C.elegans homeo... 28 3.9
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ... 28 3.9
Z48795-6|CAA88730.1| 203|Caenorhabditis elegans Hypothetical pr... 27 5.1
U88315-17|AAK68238.1| 132|Caenorhabditis elegans Hypothetical p... 27 6.8
U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical p... 27 6.8
U64833-6|AAK95861.1| 350|Caenorhabditis elegans Hypothetical pr... 27 6.8
U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf (diva... 27 9.0
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 27 9.0
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 27 9.0
>Z30423-8|CAA83011.1| 129|Caenorhabditis elegans Hypothetical
protein T20G5.10 protein.
Length = 129
Score = 138 bits (335), Expect = 1e-33
Identities = 66/111 (59%), Positives = 81/111 (72%)
Frame = +3
Query: 54 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 233
KEH KQ +R VQE+ + E I AA L+ A+VDHLN VAQAY NQK+LD EAK
Sbjct: 3 KEHSKKQHLRREVQEKLKNEAIVAAQTLSTAVVDHLNAKVAQAYGNQKRLDVEAKRFENN 62
Query: 234 AINFSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLERAYE 386
+ +KQT+QWL + E + ALKEIGDVENW+++IENDMKIIT+TL RAYE
Sbjct: 63 SAALAKQTEQWLFITEGLNYALKEIGDVENWSKTIENDMKIITETLRRAYE 113
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 33.1 bits (72), Expect = 0.10
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 186 LNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITD 365
LN+ E K+ H I +K QQ L EN + GD+E R +E D+K+ +
Sbjct: 1019 LNEDLQSEEDKVNHLEKIR-NKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQE 1077
Query: 366 TLE 374
++
Sbjct: 1078 NID 1080
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 33.1 bits (72), Expect = 0.10
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 186 LNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITD 365
LN+ E K+ H I +K QQ L EN + GD+E R +E D+K+ +
Sbjct: 1019 LNEDLQSEEDKVNHLEKIR-NKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQE 1077
Query: 366 TLE 374
++
Sbjct: 1078 NID 1080
>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical
protein C01B9.1b protein.
Length = 1671
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 255 FVWKNLLHLGVKVLLPH-LTFSDLNRLEQHRHLNDLPML 142
F ++ HLG+ ++ H ++F DL L++H +D+P +
Sbjct: 520 FARRDFGHLGIAKIIAHPISFEDLTFLKEHFITSDIPQM 558
>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
protein C01B9.1a protein.
Length = 1601
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 255 FVWKNLLHLGVKVLLPH-LTFSDLNRLEQHRHLNDLPML 142
F ++ HLG+ ++ H ++F DL L++H +D+P +
Sbjct: 450 FARRDFGHLGIAKIIAHPISFEDLTFLKEHFITSDIPQM 488
>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
protein C18H2.5 protein.
Length = 1139
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +3
Query: 120 TAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENF--SS 293
TA + L +++LN Q +N+KK D + +LLH+ + S T +++T V SS
Sbjct: 455 TALDSLNNLNLENLN---PQETINEKKYDTDYQLLHKSSKIHS--TVEFITSVRRIGNSS 509
Query: 294 ALKEIGDVENWARSIENDMKIITDTLERAYEKAQE 398
K+I D + D + LE ++++
Sbjct: 510 DHKKIKDAVKIYSDMRTDYVAVEKFLEETRRQSKQ 544
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 192 QKKLDAEAKLLHQGAINFS-KQTQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDT 368
++ L+ E G +N+ K+ Q L VE + ALK +GDV A + EN +
Sbjct: 887 EEALETEKDFSRYGRVNYVLKERLQLLNCVEKLAKALKIVGDV---AYTCENAGYFFRFS 943
Query: 369 LERAYEKAQEKPSS 410
+ R +E+ K +S
Sbjct: 944 VCRVWEEFLAKVTS 957
>L14331-8|AAA28100.1| 586|Caenorhabditis elegans C.elegans homeobox
protein 26 protein.
Length = 586
Score = 27.9 bits (59), Expect = 3.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 180 AYLNQ-KKLDAEAKLLHQGAINFSKQTQQWL-TLVENFSSALKEIGDVENWA 329
A+L+Q +K A A++LH G IN + LV NF L+++ + +WA
Sbjct: 233 AFLDQQRKQVAAAQILHNGKINIERLVSSVKGDLVTNFMKDLEKV--IRDWA 282
>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
protein Y48G1C.5 protein.
Length = 1161
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 228 QGAINFSKQTQQWLTLVENFSSALKEIGDVENW--ARSIENDMKIITDT 368
Q I + Q+ T V++ +IGD++ W + + DMK ITD+
Sbjct: 114 QSNIGDDVEADQFFTTVKSVVHVAHDIGDLKKWPDETNFKADMKDITDS 162
>Z48795-6|CAA88730.1| 203|Caenorhabditis elegans Hypothetical
protein R05H5.7 protein.
Length = 203
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 227 PRCNKFFQTNTAMVDSCGKFQQCSQRNWGCRKLG 328
PR N F TN+ ++ + F +C + C++ G
Sbjct: 78 PRFNSFVNTNSIIISNENGFGECRPHHTNCQQSG 111
>U88315-17|AAK68238.1| 132|Caenorhabditis elegans Hypothetical
protein C37H5.13b protein.
Length = 132
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 60 HQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVG-VAQAY 185
H K A+R + EQKR E +T N ++ H N V Q++
Sbjct: 10 HFVKSTARRFI-EQKRLESLTTGNGMSSPSSTHANTAPVVQSH 51
>U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical
protein C37H5.13a protein.
Length = 414
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 60 HQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVG-VAQAY 185
H K A+R + EQKR E +T N ++ H N V Q++
Sbjct: 10 HFVKSTARRFI-EQKRLESLTTGNGMSSPSSTHANTAPVVQSH 51
>U64833-6|AAK95861.1| 350|Caenorhabditis elegans Hypothetical
protein B0507.8 protein.
Length = 350
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 60 HQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGV 173
H+A++ A +E++++ + A ND+ LVD ++G+
Sbjct: 125 HEAQREAASSEREERKENQVMAINDIRSDLVDVQSMGM 162
>U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 2 protein.
Length = 465
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 176 SSLFKSEKVRCGSKTFTPRCNKFFQTNTAMVDSCGKF 286
S+L KS KV SKT NK+F +A S F
Sbjct: 194 SALVKSRKVDRSSKTRIAEANKYFSIESAFALSVSFF 230
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 26.6 bits (56), Expect = 9.0
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +3
Query: 69 KQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFS 248
KQ V + KE + A + Q N+ A+ +N L+AE + L A N S
Sbjct: 442 KQLELEVQLSSENKEKLQAELMVVQEKASE-NIKNAEEKVNG--LEAEVEKLRFEATNNS 498
Query: 249 KQTQQWLTLVENFSSALKEIGDVEN 323
+ + L E S +KEI D+EN
Sbjct: 499 RVVELEQQLEEFRSLMIKEISDLEN 523
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 155 SFKC-RC-CSSLFKSEKVRCGSKTFTPRCNK 241
S KC C CS+ KS+ R S+ T RCNK
Sbjct: 313 SSKCISCVCSNYRKSDGCRSSSRFLTGRCNK 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,508,014
Number of Sequences: 27780
Number of extensions: 178616
Number of successful extensions: 634
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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