Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   9e-39
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          32   0.33 
SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)                    30   1.3  
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)              30   1.3  
SB_26179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_14662| Best HMM Match : 7tm_1 (HMM E-Value=8.99998e-41)             28   5.4  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score =  156 bits (379), Expect = 9e-39
 Identities = 71/82 (86%), Positives = 76/82 (92%)
 Frame = +1

Query: 124 AAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFK 303
           A+ YH NVI+HYENP+NVGSLDK D  VGTGLVGAPACGDVMKLQIKVDE GKI+DAKFK
Sbjct: 28  ASNYHKNVIEHYENPKNVGSLDKDDATVGTGLVGAPACGDVMKLQIKVDEQGKIIDAKFK 87

Query: 304 TFGCGSAIASSSLATEWVKGKT 369
           TFGCGSAIASSSLATEWVKGK+
Sbjct: 88  TFGCGSAIASSSLATEWVKGKS 109


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
 Frame = -1

Query: 437  SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARE-LEAIAEPHPKVLNLAS-TIFPFSST 264
            SL+    SS  +S F   S+S +VFP + S+  + L + + P   + + +S ++FP SS+
Sbjct: 1168 SLSDFLTSSSLLSDFLTSSSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSS 1227

Query: 263  LICNFITS 240
            L  +F+TS
Sbjct: 1228 LPSDFLTS 1235



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = -1

Query: 485  SDNAALIASSASIEQ*SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 306
            S + ++  +S+S+    LT    SSL  S F   S+S +VFP + S+  +    +     
Sbjct: 856  SSSLSVFPTSSSLPSDFLTS---SSLP-SDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSD 911

Query: 305  VLNLAST--IFPFSSTLICNFITS 240
             L  +S+  +FP SS+L  +F+TS
Sbjct: 912  FLTSSSSLSVFPTSSSLPSDFVTS 935



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = -1

Query: 485 SDNAALIASSASIEQ*SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 306
           S + ++  +S+S+    LT    SSL  S F   S+S +VFP + S+  +    +     
Sbjct: 591 SSSLSVFLTSSSLPSDFLTS---SSLP-SDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSD 646

Query: 305 VLNLAST--IFPFSSTLICNFITS 240
            L  +S+  +FP SS+L  +F+TS
Sbjct: 647 FLTSSSSLSVFPTSSSLPSDFLTS 670



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = -1

Query: 485  SDNAALIASSASIEQ*SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 306
            S + ++  +S+S+    LT    SSL  S F   S+S +VFP + S+  +    +     
Sbjct: 1186 SSSLSVFPTSSSLPSDFLTS---SSLP-SDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSD 1241

Query: 305  VLNLAST--IFPFSSTLICNFITS 240
             L  +S+  +FP SS+L  +F+TS
Sbjct: 1242 FLTSSSSLSVFPTSSSLPSDFLTS 1265



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = -1

Query: 416 SSLAISVFFNFSASSTVFPLTHSVARE-LEAIAEPHPKVLNLAS-TIFPFSSTLICNFIT 243
           SS ++S F   S+S +VF  + S+  + L + + P   + + +S ++FP SS+L  +F+T
Sbjct: 580 SSSSLSDFLTSSSSLSVFLTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLT 639

Query: 242 S 240
           S
Sbjct: 640 S 640


>SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)
          Length = 505

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 28  ICFSEIYKMAFLINGIRRCMCLKGFGS 108
           I F  I  +AF++  IRRC C++  GS
Sbjct: 351 ILFDSIVMLAFIVVCIRRCWCMRAEGS 377


>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
          Length = 748

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
 Frame = +1

Query: 100 FGSPNVILAAPYHANVIDHYENPRNV---GSLDKKDKNVGTGLVGAPAC---GDVMKLQI 261
           FG P  I  A +  NV++  E P+ +    +   +D  +G    G  A    GD +   I
Sbjct: 411 FGHPVGITTATFMVNVLNKDEPPKQITLNPTSVAEDAGIGARAAGLTALDEEGDTIVFSI 470

Query: 262 KVDENGKIVDAKFKTFGCGSAIASSSLATE-WVKGKTVDEALKLKNTDIAKELSLPPV 432
              +N  +   +     C      S+ A +  VKGK   EA  L +  +    S  PV
Sbjct: 471 APSDNSTLEKFEIGPTSCRLNGKQSTCAADLMVKGKLDYEARDLYSLTVMANSSTGPV 528


>SB_26179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 SLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIV 288
           SLD  D+ + T L  A ACG++  ++  +DE   IV
Sbjct: 91  SLDATDRELWTPLHAATACGNIDVVEYLMDEGANIV 126


>SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 201 KCRYRPRWCTCMWRRNEVANQSGR 272
           KC     WC C WRR++   +S R
Sbjct: 57  KCSRTTPWCWCSWRRSDSYGRSAR 80


>SB_14662| Best HMM Match : 7tm_1 (HMM E-Value=8.99998e-41)
          Length = 548

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +1

Query: 103 GSPNVIL-AAPYHANVIDHYENP-RNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDEN 276
           G  NVI+  AP    V  +   P +  GSL   +K+   G+    +C +  K+ IKV EN
Sbjct: 362 GKVNVIVYLAPSDKRVKLNNNGPLKQNGSLQVYNKS-HQGICSETSCAEKPKIVIKVSEN 420

Query: 277 G-KIVDAKFKTF 309
           G +  + K KTF
Sbjct: 421 GDEAGNNKGKTF 432


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 247 MKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVD 375
           + L+  V EN   V+A  KT GC S  A       WV+    D
Sbjct: 524 LSLKFYVSENCPSVEAVVKTLGCTSLDAPDDAEALWVESVVGD 566


>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = -3

Query: 222 NEACTYIFIFLIQ*TNIARILVMVNDVCMIRCRKNHIRTSKAFKTHTSTNSVD 64
           NE  T+IF+ L + T + R  + + ++C+I  +K+H+   +A +T T    +D
Sbjct: 77  NEFLTFIFLDL-ETTGLRRP-IEITEICLIAVQKDHL--LRAAETKTEPRLID 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,552,893
Number of Sequences: 59808
Number of extensions: 315184
Number of successful extensions: 980
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)