Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 239 PHAGAPTRPVPTFLSFLSNEPTL 171
           P AGAP  P+P  +S +S  P L
Sbjct: 411 PSAGAPMPPIPN-MSNMSGMPPL 432


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/49 (24%), Positives = 17/49 (34%)
 Frame = -1

Query: 314 HPKVLNLASTIFPFSSTLICNFITSPHAGAPTRPVPTFLSFLSNEPTLR 168
           H + L       PF   L+ +F        P  P PT +  L     +R
Sbjct: 129 HVRALAAGGNHLPFHEKLVESFPRGGSLPTPVTPTPTTVQQLLRRAQIR 177


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 LCSSILVPHQLFFL 359
           LCSSIL+   +FFL
Sbjct: 283 LCSSILLSLTVFFL 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,953
Number of Sequences: 438
Number of extensions: 2880
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)