Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H11f
         (512 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.6  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 6   LSYKYLYSSGQLDICNPV*IQKYKTVKDDTTF 101
           L++ YL + G L + N V I+  KT  D+TTF
Sbjct: 423 LAWLYLNNEGSL-VYN-VQIENLKTTPDNTTF 452


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 145 HFYKRRLASASVMIPRQTTFSNVTRFLINTDENKCVCWGECGEILXVA 288
           +F  + LA + + I    T ++V  F+I  + +    +  CG ++ VA
Sbjct: 490 YFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGFRFYIACGIMILVA 537


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 94  VSSLTVLYFCIYTGL 50
           V ++ VLY C YT L
Sbjct: 172 VQAIEVLYICSYTVL 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,074
Number of Sequences: 336
Number of extensions: 1580
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)