Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H11f
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 119 3e-28
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 113 1e-26
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 2.2
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 26 2.9
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 6.7
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 6.7
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.8
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 8.8
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 8.8
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 25 8.8
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 119 bits (286), Expect = 3e-28
Identities = 55/65 (84%), Positives = 60/65 (92%)
Frame = -3
Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
GLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 174 GLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLW 233
Query: 330 TSDTQ 316
TSD +
Sbjct: 234 TSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 113 bits (272), Expect = 1e-26
Identities = 52/65 (80%), Positives = 58/65 (89%)
Frame = -3
Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
GLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 173 GLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLW 232
Query: 330 TSDTQ 316
TSD +
Sbjct: 233 TSDAE 237
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 163 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILXVAA 291
L + SV+I +TFS V+R L +T + VCW C L A+
Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 134 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 42
FA LPVP K C F F+ L +W+ D+
Sbjct: 31 FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 6.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +3
Query: 393 RSMXPVRRWHRRKPVWRVDTP 455
R + P+ +W R++ +W + P
Sbjct: 120 RDVTPINQWKRKRSLWDIKPP 140
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -3
Query: 483 YYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDN 343
Y ++ D QLA Q F +++ L +++ S ++Q ++DN
Sbjct: 449 YDDLFPYMDNFIQLAVQLFYHISKKVNCLYVEAFSSSDAVLQRIQDN 495
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 8.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 19 IYIHQVSSISAIQCKYRNTKPSKMTQHLILDGTGR 123
I + Q ++I+A+ +YR +K T +ILD G+
Sbjct: 156 IEMKQFTNIAAV-LRYRGVHSAKKTAFIILDNKGK 189
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 21 LYSSGQL-DICNPV*IQKYKTVKDDTTFNFRRNGK 122
L SS QL DIC + Y DD F F +N K
Sbjct: 133 LLSSSQLSDICIKDFVTSYLVPYDDVRFFFYKNSK 167
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 510 GLALNFSVFYYEI--LNSPDKACQLAKQAFDDAIAELDXLXEDSY 382
G A N F+ + + S KACQ + Q A+ EL+ +D Y
Sbjct: 18 GFANNKDAFFQTLGGVQSIQKACQTSFQNPKQALLELNLRPKDKY 62
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 31 QVSSISAIQCKYRNTKPSKMTQHLILDGTGRSAAN 135
+++ +S Q YR PS+ +Q LI G G + +
Sbjct: 31 ELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGD 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,383
Number of Sequences: 5004
Number of extensions: 27472
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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