Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H11f
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...   121   3e-28
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...   120   9e-28
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...   120   9e-28
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...   118   2e-27
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...   118   2e-27
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553...   118   2e-27
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593...   107   4e-24
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007...    69   2e-12
04_04_1588 - 34633057-34633824                                         27   6.7  
04_04_0024 - 22216105-22217856                                         27   8.8  

>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score =  121 bits (292), Expect = 3e-28
 Identities = 57/63 (90%), Positives = 59/63 (93%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILNSPD+AC LAKQAFDDAIAELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 178 GLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLW 237

Query: 330 TSD 322
           TSD
Sbjct: 238 TSD 240


>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score =  120 bits (288), Expect = 9e-28
 Identities = 56/65 (86%), Positives = 60/65 (92%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 183 GLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLW 242

Query: 330 TSDTQ 316
           TSD Q
Sbjct: 243 TSDMQ 247


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score =  120 bits (288), Expect = 9e-28
 Identities = 56/63 (88%), Positives = 59/63 (93%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILNSPDKAC LAKQAFD+AI+ELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 173 GLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLW 232

Query: 330 TSD 322
           TSD
Sbjct: 233 TSD 235


>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score =  118 bits (285), Expect = 2e-27
 Identities = 55/63 (87%), Positives = 59/63 (93%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 156 GLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLW 215

Query: 330 TSD 322
           TSD
Sbjct: 216 TSD 218


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score =  118 bits (285), Expect = 2e-27
 Identities = 55/63 (87%), Positives = 59/63 (93%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 179 GLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLW 238

Query: 330 TSD 322
           TSD
Sbjct: 239 TSD 241


>02_04_0360 +
           22353057-22353691,22354716-22355144,22355233-22355311,
           22355472-22355594,22356256-22356372,22356636-22356833
          Length = 526

 Score =  118 bits (285), Expect = 2e-27
 Identities = 55/63 (87%), Positives = 59/63 (93%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD L E+SYKDSTLIMQLLRDNL LW
Sbjct: 397 GLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLW 456

Query: 330 TSD 322
           TSD
Sbjct: 457 TSD 459


>01_01_0767 +
           5931031-5931281,5931414-5931594,5932020-5932129,
           5932212-5932360,5932686-5932738,5933168-5933260
          Length = 278

 Score =  107 bits (258), Expect = 4e-24
 Identities = 50/63 (79%), Positives = 55/63 (87%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALN SVFY EI+NSPDKACQLAK AFD+A+AEL  L E++YKDSTLIMQLLRDNL LW
Sbjct: 163 GLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALW 222

Query: 330 TSD 322
            SD
Sbjct: 223 NSD 225


>11_06_0360 -
           22699524-22699529,22699865-22699899,22700650-22700792,
           22701165-22701220,22701367-22701454,22702737-22703037,
           22704365-22704428
          Length = 230

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/52 (57%), Positives = 42/52 (80%)
 Frame = -3

Query: 477 EILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLWTSD 322
           EI+NSP++A Q+AKQA D+A AE++    + YKDS L+MQLL++NL LWTS+
Sbjct: 163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSE 214


>04_04_1588 - 34633057-34633824
          Length = 255

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 244 KCVCWGECGEILXVAALGRXVAIALSV*RPK 336
           +CVCW     ++   ALG    I  +V +PK
Sbjct: 68  RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98


>04_04_0024 - 22216105-22217856
          Length = 583

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 79  PSKMTQHLILDGTGRSAANDF*HFYKRRLASASVMIPRQTTFSNV 213
           P  +T ++++DG  R+      H   RRL    V +P   TF++V
Sbjct: 284 PDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSV 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,482,571
Number of Sequences: 37544
Number of extensions: 169525
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)