Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H11f
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     107   5e-24
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   5e-24
SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)                   28   3.9  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    28   5.2  
SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  

>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  107 bits (257), Expect = 5e-24
 Identities = 50/63 (79%), Positives = 56/63 (88%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEI N P +AC+LAK+AFDDAIA LD L ++SYKDSTLIMQLLRDNL LW
Sbjct: 177 GLALNFSVFYYEIENKPPEACKLAKEAFDDAIAVLDNLKDESYKDSTLIMQLLRDNLTLW 236

Query: 330 TSD 322
           TS+
Sbjct: 237 TSE 239


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  107 bits (257), Expect = 5e-24
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVF+YEI  + ++AC+LAKQAFDDAIAELD L ED YKDSTLIMQLLRDNL LW
Sbjct: 239 GLALNFSVFHYEIQENQEEACKLAKQAFDDAIAELDSLNEDQYKDSTLIMQLLRDNLTLW 298

Query: 330 TSDTQ 316
           +S+ Q
Sbjct: 299 SSENQ 303



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 46/57 (80%), Positives = 49/57 (85%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNL 340
           GLALNFSVFYYEI+    +AC LAK+AFDDAIAELD L ED YKDSTLIMQLLRDNL
Sbjct: 150 GLALNFSVFYYEIVEDSKQACDLAKKAFDDAIAELDTLSEDQYKDSTLIMQLLRDNL 206


>SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)
          Length = 1586

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 225  KKTSNIRERRLARY-HHXSRREPSLVKMLKVVRSGPSRS 112
            K T+ + E+    Y  +  RR+ S +  LKV R GPS+S
Sbjct: 1207 KMTAAVAEKYQQDYGRYQQRRQKSSIGKLKVAREGPSQS 1245


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 114  NGKVRCERLLTFLQATARVGFXDDTAPDDVLEC 212
            +G  RCE L    Q T R GF       DV +C
Sbjct: 1851 SGSSRCENLENGFQCTCRAGFTGKYCETDVDDC 1883


>SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +1

Query: 22  YIHQVSSISAIQCKYRNTKPSKMTQHLILDGTGRSAANDF*HFYKRRLASASVMIPRQTT 201
           YIH V SI A    +       + + L L GT R    +F HF++   A  ++ +   T 
Sbjct: 168 YIHGVFSICADPRAFHE---HNLVKELKL-GTSRFPEQNFDHFFQYSTAVLALCVSGYTH 223

Query: 202 FSNVTRFLIN 231
            S +TR L+N
Sbjct: 224 ASFLTRPLVN 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,777
Number of Sequences: 59808
Number of extensions: 211244
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)