Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H11f
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...   123   7e-29
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...   121   3e-28
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...   121   3e-28
Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical pr...    56   2e-08
Z73910-3|CAA98135.1|  125|Caenorhabditis elegans Hypothetical pr...    39   0.002
U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score =  123 bits (297), Expect = 7e-29
 Identities = 58/63 (92%), Positives = 60/63 (95%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVF+YEILN+PDKACQLAKQAFDDAIAELD L EDSYKDSTLIMQLLRDNL LW
Sbjct: 171 GLALNFSVFFYEILNAPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLW 230

Query: 330 TSD 322
           TSD
Sbjct: 231 TSD 233


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score =  121 bits (291), Expect = 3e-28
 Identities = 57/63 (90%), Positives = 59/63 (93%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILN+P+ ACQLAKQAFDDAIAELD L EDSYKDSTLIMQLLRDNL LW
Sbjct: 170 GLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLW 229

Query: 330 TSD 322
           TSD
Sbjct: 230 TSD 232


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score =  121 bits (291), Expect = 3e-28
 Identities = 57/63 (90%), Positives = 59/63 (93%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXEDSYKDSTLIMQLLRDNLXLW 331
           GLALNFSVFYYEILN+P+ ACQLAKQAFDDAIAELD L EDSYKDSTLIMQLLRDNL LW
Sbjct: 170 GLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLW 229

Query: 330 TSD 322
           TSD
Sbjct: 230 TSD 232


>Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical
           protein F52D10.3b protein.
          Length = 198

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQ 433
           GLALNFSVF+YEILN+PDKACQLAKQ
Sbjct: 171 GLALNFSVFFYEILNAPDKACQLAKQ 196


>Z73910-3|CAA98135.1|  125|Caenorhabditis elegans Hypothetical
           protein M117.3 protein.
          Length = 125

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 510 GLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDXLXE--DSYKDSTL 367
           GLALN S   +++LN P +A ++A+ A D A  EL+ +    DSY  S L
Sbjct: 48  GLALNASALNFDVLNLPKEANEIAQSALDSAHRELEKMKSSLDSYDISNL 97


>U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical
           protein F25B4.5 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -3

Query: 198 RLARYHHXSRREPSLV-KMLK 139
           +LARYH  SRR+P L  K+LK
Sbjct: 537 KLARYHQKSRRDPKLAQKVLK 557


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
           protein C34D4.14 protein.
          Length = 2761

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 144 TFLQATARVGFXDDTAPDDVLE 209
           TF+ A  ++ F D+TAPD+VLE
Sbjct: 52  TFIPALCKI-FIDETAPDNVLE 72


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 87  DDTTFNFRRNGKVRCERLLT 146
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 87  DDTTFNFRRNGKVRCERLLT 146
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 87  DDTTFNFRRNGKVRCERLLT 146
           D   FNFRR G+  C +LLT
Sbjct: 276 DANGFNFRRTGRFSCMQLLT 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,229,802
Number of Sequences: 27780
Number of extensions: 152145
Number of successful extensions: 502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)