Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 0.73
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 26 3.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 3.0
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 25 5.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 5.2
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 6.8
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 6.8
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 6.8
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 9.0
>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 100
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 65 NNLVFFPG*LKLFRFC 18
NNLVFF G LFRFC
Sbjct: 85 NNLVFFMGKCDLFRFC 100
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +1
Query: 76 SATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDST 255
S+TI S++ + S + + I + S+ SS STL+ ++M SFS +S ST
Sbjct: 287 SSTISSSSSSSSSPTSTSSTI----SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342
Query: 256 DSPTS 270
S +S
Sbjct: 343 ISSSS 347
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 148 GAKDSNDVSSKISTLNVNAMEFVPSFS-KPSQASDSTDSPTSPQ 276
G KD N +S I + A + + S KP AS +T++P+S Q
Sbjct: 477 GVKDLNKISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQ 520
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -1
Query: 299 FEEPLSDFWGEVGESVLSLA*EGLEKEGTNSMAFTFNVEIFEDTSLESFAPFSPIISASF 120
+EE L + E+G +++SL G++ N+ ++ E+ + ++F + I+ F
Sbjct: 1145 YEEQLLNLKNELGWTIVSLTAGGIKLATNNTALSPYSAEVTVEILRQNF-QVNVDIACKF 1203
Query: 119 SHESGA 102
+ES A
Sbjct: 1204 PNESNA 1209
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 200 FTFNVEIFED-TSLESFAPFSPIISASFSHESGAPLLDIIVAERKINNLVFFPG 42
+TF+ ++F L + + SF H G P++D I E K N ++ F G
Sbjct: 94 WTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK-NRILIFEG 146
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 155 FAPFSPIISASFSHESGAPLL 93
F+P +P + S++H + APLL
Sbjct: 282 FSPINPYYAKSWNHTASAPLL 302
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 202 AMEFVPSFSKPSQASDSTDSPTS 270
A E VP +PS A DS +SP S
Sbjct: 133 ANETVPRIKQPSIALDSLESPVS 155
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 160 SNDVSSKISTLNVNAMEFVPSFSKPSQAS 246
SN + TL+VN + FVP PSQA+
Sbjct: 92 SNAAWREYITLDVNLVYFVPKNITPSQAA 120
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 385 VEEPPPTTASVPPDVSPTADSWEVEADDA 471
VE P PT + P SPT E E+ A
Sbjct: 288 VEHPKPTATTSAPSASPTGVPVEEESHKA 316
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 212 NSMAFTFNVEIFEDTSLESFAPFSPIISASFSH 114
+++AF+F EIFE + F + S SF +
Sbjct: 443 SAVAFSFTEEIFEKNFVTVLPDFVKLFSISFGY 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,109
Number of Sequences: 5004
Number of extensions: 28331
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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