Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303H10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255... 32 0.32
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102... 30 0.98
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 30 1.3
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 29 1.7
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 1.7
02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670 29 1.7
08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996... 29 2.3
10_07_0138 + 13325418-13325954 29 3.0
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 4.0
06_03_1158 - 28080330-28080647,28080726-28080949,28081213-280814... 27 6.9
03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663... 27 6.9
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 27 6.9
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798... 27 6.9
01_01_0084 - 636835-637965 27 6.9
05_04_0126 + 18252594-18256922 27 9.1
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 27 9.1
>09_01_0178 -
2548611-2548670,2549816-2549918,2549993-2550096,
2550893-2550988,2551418-2551482,2551558-2551591,
2552469-2552540,2552567-2552644,2553416-2553477,
2554267-2554530,2555057-2555246,2555432-2555500,
2555613-2555669,2555746-2555846,2556029-2556146,
2556225-2556272,2556362-2556487,2556960-2557118,
2558119-2558216,2558324-2558416,2559741-2559937,
2560231-2560354,2561121-2561334,2561773-2561830,
2561955-2562433
Length = 1022
Score = 31.9 bits (69), Expect = 0.32
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 379 PRVEEPPPTTASVPPDVSPTADSWEVE 459
PRVE PPP+ A+ PP + P D + E
Sbjct: 62 PRVEGPPPSPATAPPMLHPREDDEDEE 88
>03_04_0127 -
17508808-17509029,17509195-17509938,17510004-17510242,
17510334-17510436,17510666-17510770,17510838-17510906,
17510998-17511402,17512048-17512156,17512240-17512295
Length = 683
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 70 LRSATIMSNNGAPDSWENEAEIIGE 144
L I +NN AP SW N +IIGE
Sbjct: 397 LEDRIICTNNSAPLSWYNRTQIIGE 421
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 145 KGAKDSNDVSSKISTLNVNAMEFVPS-FSKP 234
KG + + S ++TLN NA EFVPS F P
Sbjct: 29 KGGDAGSKLPSTVTTLNPNAAEFVPSTFRSP 59
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 175 SKISTLNVNAMEFVPSFSKPSQASDS 252
+K++ LN NA EFVPS +PS S +
Sbjct: 19 NKVTALNPNAAEFVPSCIRPSFESSA 44
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 379 PRVEEPPPTTASVPPDVSPTADSWE 453
P +PPP PPD P D+W+
Sbjct: 213 PVTPQPPPPPPPPPPDSKPGVDTWD 237
>02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670
Length = 197
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 385 VEEPPPTTASVPPDVSPTADSWEVEAD 465
++EPPP A P S TA W ++AD
Sbjct: 5 IDEPPPAPAPPQPKQSTTARRWWMKAD 31
>08_02_1437 -
27096364-27097252,27098931-27099022,27099382-27099654,
27099872-27100819
Length = 733
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 106 PDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTS 270
P N AEI + K ++ +S + ++ E V S +KP+ A + SPTS
Sbjct: 158 PSVKNNGAEIKKPQLTKSNSSLSKQALNSIIDKKEVVSSKTKPTSARSTPSSPTS 212
>10_07_0138 + 13325418-13325954
Length = 178
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 423 GRDRCSSRWWFFNTWRSRC 367
G RCS RW WRSRC
Sbjct: 83 GARRCSRRWRRSRRWRSRC 101
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 145 KGAKDSNDVSSKISTLNVNAMEFV-PSFSKPSQASDSTDSP 264
K K+ D ++ S L + E PS KPS A+ S+DSP
Sbjct: 692 KREKEKVDALTQSSDLTTSGKEAPKPSLGKPSSANTSSDSP 732
>06_03_1158 -
28080330-28080647,28080726-28080949,28081213-28081423,
28081536-28081708,28082093-28082156,28082353-28082514
Length = 383
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 279 FLGGGRGIGTIASLRRLRKRRHEFHGIYIQRGNF*RHIIRILCTFFTYY 133
F GG + +R + H+ H IY+ G++ H++R +FF Y
Sbjct: 84 FTGGSHSLMGKELVREITDLAHK-HDIYVSTGDWAEHLLRQGPSFFKQY 131
>03_04_0122 +
17465804-17465893,17466028-17466147,17466287-17466317,
17466978-17467153,17468051-17468142,17468259-17468340,
17468498-17468566,17468655-17468759,17471246-17471342,
17471438-17471676,17472191-17472949,17473079-17473297
Length = 692
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 70 LRSATIMSNNGAPDSWENEAEIIGE 144
L + +NN P W+N +IIGE
Sbjct: 403 LEDHIVCANNSTPLPWQNRTQIIGE 427
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 70 LRSATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVP-SFSKPSQAS 246
++ +++ A +SW + G +GA S D ++ ++ E VP S +P+ S
Sbjct: 779 VKGEIVLAQFSADNSWNRAMIVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPS 838
Query: 247 DSTDSPTSPQ 276
S+ SP Q
Sbjct: 839 ISS-SPALAQ 847
>02_04_0035 +
19078267-19078479,19078588-19078674,19079792-19079863,
19080338-19080526,19080599-19080718,19081348-19081430,
19081518-19081773,19081878-19082199,19086355-19086548,
19087135-19087227,19089327-19089497,19089580-19089699,
19090303-19090373,19090608-19090675,19091097-19091191
Length = 717
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 270 GGRGIGTIASLRRLRKRR 217
GGRG+GT+ RR KR+
Sbjct: 503 GGRGVGTVEEARRKEKRK 520
>01_01_0084 - 636835-637965
Length = 376
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 379 PRVEEPPPTTASVPPDVSPTADSWEVE-ADDALLT 480
P PPPT++++P + P+ W + AD AL T
Sbjct: 28 PGAAPPPPTSSALPTQIPPS--DWSLSPADPALAT 60
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 134 ISASFSHESGAPLLDIIVAERKINNL 57
+ S SHE G PL ++ RKIN +
Sbjct: 923 VDPSTSHEMGKPLRSAVLIPRKINKM 948
>01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 70 LRSATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQA 243
++ I+ NNG D +N A +G+K K D + K + + ++ F PS +P+ +
Sbjct: 1049 MKQIGILCNNGG-DEIKNFALDLGKKLNKVLGDCNYKTVSFDEKSLSFFPSCVQPNDS 1105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,978,234
Number of Sequences: 37544
Number of extensions: 217106
Number of successful extensions: 851
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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