Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           35   0.035
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       29   2.3  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.1  
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)               28   4.1  
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)                28   5.4  
SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)                  28   5.4  
SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 103 APDSWENEAEIIGEKGAKDSND-VSSKISTLNVNAMEFVPSFSKPS 237
           APDSW++    I + G  DS   +++  ++LNVNA  FVP+ + PS
Sbjct: 31  APDSWDS----IEDPGPGDSGQSLAADFNSLNVNAKPFVPNVNAPS 72


>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 394 PPPTTASVPPDVSPTADSW 450
           PP  TA+ PP  SP+ D W
Sbjct: 755 PPAATAATPPPSSPSGDEW 773


>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 502 PVHCFLQV*VVHHQPQLPSCLQWAR 428
           P  CF    + HHQ  LP C +++R
Sbjct: 336 PTECFFMTFLAHHQAILPCCRRYSR 360


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 73   RSATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKI----STLNVNAMEFVPSFSKPSQ 240
            +S   +S NGAP + ++ AE +    A D  + S+K+      L  N +  VP   +P Q
Sbjct: 2411 KSFVQLSGNGAP-TLKSLAEWLERNRAYDVAEESAKLVLEEGNLPSNLLTRVPKSPRPKQ 2469

Query: 241  ASDSTDSPTS 270
             + S+ +P+S
Sbjct: 2470 TTPSSANPSS 2479


>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
          Length = 823

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -1

Query: 323 FKTGLPAEFEEPLSDFWGEVGESVLSLA*EGLEKEGTNSMAFTFNVEIFEDTSLESFAPF 144
           FKT   A  E P +     V ++ + LA E + KEG N +   + ++ F+    E  A +
Sbjct: 97  FKTAEDAPSEPPANVTVKAVSKNSIVLAWEPIPKEGRNGIVDGYKIKYFKTKEGEDTAKY 156

Query: 143 SPIISASFSHES 108
             +   S S  +
Sbjct: 157 VDVKEPSRSRRA 168


>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
          Length = 1669

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 142  EKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSPQK 279
            +K  K S  VS K ST+N +      S S  S+A     S T P+K
Sbjct: 1046 DKKDKSSIGVSDKASTVNEDPEGAGKSHSSESEAESKRSSKTRPKK 1091


>SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)
          Length = 229

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 191 NVEIFEDTSLESFAPFSPIISASFSHESGAPL 96
           N E   DT++E++  FS + S+ F H  G P+
Sbjct: 40  NQEPVSDTNVETWKSFSGVRSSKFRHIIGVPM 71


>SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 145 KGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSPQ 276
           KGA+  N VS    T      E VPS   PS+A ++T    SP+
Sbjct: 50  KGAEKENTVSVNGETTTEGKSEIVPS---PSEAMNATFIKNSPE 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,365
Number of Sequences: 59808
Number of extensions: 218836
Number of successful extensions: 622
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)