Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19510.1 68414.m02430 myb family transcription factor contain...    28   3.3  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    28   3.3  
At4g36570.1 68417.m05192 myb family transcription factor conatin...    27   5.8  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    27   5.8  

>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 49  KKTKLFILRSATIMSNNGAPDSWENEAEIIGEKGAKD 159
           K+ K+F    A  + +   PD W+N A+ +G K A++
Sbjct: 15  KQNKMF--ERALAVYDKDTPDRWQNVAKAVGSKSAEE 49


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 154 KDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSP 273
           KDSN  +      N NA+ F+P    P  +      PTSP
Sbjct: 308 KDSNSPTFMKPYGNTNAVHFMPKMQIPRNSFGQQSPPTSP 347


>At4g36570.1 68417.m05192 myb family transcription factor conatins
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 85

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 49  KKTKLFILRSATIMSNNGAPDSWENEAEIIGEKGAKDS 162
           K+ KLF    AT   +   PD W N A  +G K A+++
Sbjct: 15  KENKLFERALATY--DQDTPDRWHNVARAVGGKSAEEN 50


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
            protein contains protein kinase domain, Pfam:PF00069;
            contains serine/threonine protein kinase domain,
            INTERPRO:IPR002290
          Length = 1296

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 412  SVPPDVSPTADSWEVEADDA 471
            SVPP +SP  D W   +D A
Sbjct: 1274 SVPPPISPETDKWTSSSDTA 1293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,272,666
Number of Sequences: 28952
Number of extensions: 162354
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)