Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   3.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   5.0  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 295 CLSDNLNKMFLTD*YKKKKK 354
           CLS  L    LTD YKK KK
Sbjct: 273 CLSTRLFYYQLTDLYKKIKK 292


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 223 KGQMERHRQLKRPPVRHKRQGQQRMQLIRC*CDGST 116
           K   E+  ++K+        G    +++RC C GST
Sbjct: 891 KATCEKLFRMKKSSALRPASGGTTARVVRCVCAGST 926


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 105 CGYHCRCRHQ 76
           CG +C C HQ
Sbjct: 562 CGQNCMCTHQ 571


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 322 TFYSGCHLNRILRSGIKRQHSRQGQRDRGPKL 227
           T    C L + L  G+ +  SR G+R    K+
Sbjct: 56  TACKACRLRKCLLVGMSKSGSRYGRRSNWFKI 87


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 440 GKNPGVTQLKXPCSTSPLSPSWR 508
           G   GVT    P   SPL   W+
Sbjct: 205 GSWAGVTAQNSPLYASPLDGEWQ 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,864
Number of Sequences: 336
Number of extensions: 2121
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)