Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303H09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    32   0.32 
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625     30   1.3  
01_05_0421 + 21990034-21990392,21991691-21992681                       30   1.3  
12_01_0347 + 2658545-2659309                                           29   2.3  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    29   3.0  
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491...    28   4.0  

>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 96  GNRNKLSVLPSHQQRISCIRCCPCRLCRTGGRFSCLCRSICPFGSF 233
           GN   LS++PSH     CI C   R+  T  R       + P G F
Sbjct: 275 GNLKSLSLVPSHSASSKCISCDGLRIVSTPPRLLQKLELLMPIGVF 320


>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
          Length = 768

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 226 PKGQMERHRQLKRPPVR--HKRQGQQRMQLI 140
           P+G    HR+L  PP+R  H+R G+Q   ++
Sbjct: 134 PRGAHFNHRRLHHPPIRLKHRRDGEQPANVV 164


>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 217 QMERHRQLKRPPVRHKRQGQQRMQLIRC*C 128
           Q + H+ + + P +H++Q QQR QL++  C
Sbjct: 187 QQQHHQDVMQSPHQHQQQQQQRQQLVQQNC 216


>12_01_0347 + 2658545-2659309
          Length = 254

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  AGRHRRGQADTFKRTIGGGTCSG 98
           A RHRR   +T  R +GGG C G
Sbjct: 142 ARRHRRWSLETRPRGVGGGCCPG 164


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 286 RSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQGQQR 152
           RS  +R+ SR  +RD   +  +   +R R   R   RH R+ + R
Sbjct: 276 RSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDR 320


>07_03_1185 +
           24645963-24646316,24647990-24648226,24649027-24649170,
           24649296-24649427,24649524-24649811
          Length = 384

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 286 RSGIKRQHSRQGQRDRGPKLPKGQMERHRQLKRPPVRHKRQ 164
           RS   R  +R+ Q+ +GP LP+    R R L  P + H +Q
Sbjct: 75  RSASVRYAARRQQQQQGPPLPRSSSTRPRSLADPEL-HPQQ 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,022
Number of Sequences: 37544
Number of extensions: 271681
Number of successful extensions: 876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)